RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815	PCDHA4	Q9UN74	947 aa		13.64	□□□□□ -0.23
CUX1-210	ENST00000497815	ASTN1	O14525	1302 aa		13.64	□□□□□ -0.23
CUX1-210	ENST00000497815	ABCB7	O75027	752 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	MMP1	P03956	469 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	XRCC5	P13010	732 aa	Known RBP	13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	ALDH5A1	P51649	535 aa	Predicted RBP	13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	IRF5	Q13568	498 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	LARP1B	Q659C4	914 aa	Known RBP	13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	SAMD3	Q8N6K7	520 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	OXER1	Q8TDS5	423 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	TRIB2	Q92519	343 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	MAF1	Q9H063	256 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	PXMP2	Q9NR77	195 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	PCDHA6	Q9UN73	950 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	RBM19	Q9Y4C8	960 aa	Known RBP	13.63	□□□□□ -0.23
CUX1-210	ENST00000497815	PCDHA8	Q9Y5H6	950 aa		13.63	□□□□□ -0.23
CUX1-210	ENST00000497815		H3BQV1	296 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	MYCL	P12524	364 aa	Predicted RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	CYP2C19	P33261	490 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	KRT2	P35908	639 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	CLK2	P49760	499 aa	Known RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	PDE4D	Q08499	809 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	TRIM32	Q13049	653 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	SAFB	Q15424	915 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	NPY5R	Q15761	445 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	IFFO2	Q5TF58	517 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	GALNT17	Q6IS24	598 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	DIS3L2	Q8IYB7	885 aa	Known RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	FAM177A1	Q8N128	213 aa	Predicted RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	DAGLB	Q8NCG7	672 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	DNER	Q8NFT8	737 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	FBXO18	Q8NFZ0	1043 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	NSUN6	Q8TEA1	469 aa	Known RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	SH3TC2	Q8TF17	1288 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	ZFP91	Q96JP5	570 aa	Predicted RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	ANO3	Q9BYT9	981 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	BRMS1	Q9HCU9	246 aa		13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	DIS3	Q9Y2L1	958 aa	Known RBP	13.62	□□□□□ -0.23
CUX1-210	ENST00000497815	VPS37C	A5D8V6	355 aa	Predicted RBP	13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	ASB14	A6NK59	587 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	BTBD18	B2RXH4	712 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	GRK4	P32298	578 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	NR5A1	Q13285	461 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	AP3B2	Q13367	1082 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	GNL2	Q13823	731 aa	Known RBP	13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	PGM5	Q15124	567 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	OLFML2B	Q68BL8	750 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	ARMCX2	Q7L311	632 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	EEPD1	Q7L9B9	569 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	IL31RA	Q8NI17	732 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	MPHOSPH6	Q99547	160 aa	Known RBP	13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	TINF2	Q9BSI4	451 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	EHMT1	Q9H9B1	1298 aa		13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	DAXX	Q9UER7	740 aa	Predicted RBP	13.61	□□□□□ -0.23
CUX1-210	ENST00000497815	LCT	P09848	1927 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	FOS	P01100	380 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	MYC	P01106	439 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	HMGCR	P04035	888 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	NR3C2	P08235	984 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	PDC	P20941	246 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	SLC9C1	Q4G0N8	1177 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	PRAMEF19	Q5SWL8	479 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	MFSD14C	Q5VZR4	134 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	MCTP1	Q6DN14	999 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	TRMT44	Q8IYL2	757 aa	Known RBP	13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	SLAIN1	Q8ND83	568 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	PXYLP1	Q8TE99	480 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	PDCD2L	Q9BRP1	358 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	RPTOR	Q8N122	1335 aa		13.6	□□□□□ -0.23
CUX1-210	ENST00000497815	PLXNA1	Q9UIW2	1896 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	CCDC194	A0A1B0GVG4	234 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	FAM205C	A6NFA0	338 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815		B4DLN1	442 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815		M0R2N6	131 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	SNAI1	O95863	264 aa	Predicted RBP	13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	INHA	P05111	366 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	SYT1	P21579	422 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	CCND2	P30279	289 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	PKN2	Q16513	984 aa	Known RBP	13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	MCTP2	Q6DN12	878 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	MAMDC4	Q6UXC1	1216 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	PIK3AP1	Q6ZUJ8	805 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	KRT25	Q7Z3Z0	450 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	TEX2	Q8IWB9	1127 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	FBXO16	Q8IX29	292 aa	Predicted RBP	13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	IWS1	Q96ST2	819 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	RTEL1	Q9NZ71	1219 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	CNPY2	Q9Y2B0	182 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	SYNGAP1	Q96PV0	1343 aa		13.59	□□□□□ -0.23
CUX1-210	ENST00000497815	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.58	□□□□□ -0.23
CUX1-210	ENST00000497815	KIF28P	B7ZC32	967 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	PRKAR2A	P13861	404 aa	Known RBP	13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	EDNRB	P24530	442 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	ARHGAP4	P98171	946 aa		13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	CACNB2	Q08289	660 aa	Predicted RBP	13.58	□□□□□ -0.24
CUX1-210	ENST00000497815	NONO	Q15233	471 aa	Known RBP eCLIP	13.58	□□□□□ -0.24	1e-6	■■■□□ 18.5

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