RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 NECTIN1Q15223 517 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 BRDTQ58F21 947 aaPredicted RBP18.25■□□□□ 0.51
HDAC4-213ENST00000496347 SKAP1Q86WV1 359 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 FAM126BQ8IXS8 530 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 ZNF654Q8IZM8 581 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 CTCFLQ8NI51 663 aaPredicted RBP18.25■□□□□ 0.51
HDAC4-213ENST00000496347 VTI1AQ96AJ9 217 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 LRCH3Q96II8 777 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 RMDN3Q96TC7 470 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 COL20A1Q9P218 1284 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 PCDHA1Q9Y5I3 950 aa18.25■□□□□ 0.51
HDAC4-213ENST00000496347 SH2B2O14492 632 aaPredicted RBP18.24■□□□□ 0.51
HDAC4-213ENST00000496347 OPLAHO14841 1288 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 TLR3O15455 904 aaKnown RBP18.24■□□□□ 0.51
HDAC4-213ENST00000496347 PTGS1P23219 599 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 LIFRP42702 1097 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 TTLL4Q14679 1199 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 SLC35G1Q2M3R5 365 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 HOMER1Q86YM7 354 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 TMTC2Q8N394 836 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 SLC43A3Q8NBI5 491 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 OR6J1Q8NGC5 347 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 SPZ1Q9BXG8 430 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 POLR3EQ9NVU0 708 aa18.24■□□□□ 0.51
HDAC4-213ENST00000496347 PNMA6FA0A0J9YX94 578 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 CYTH3O43739 400 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 CFBP00751 764 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 ARHGEF16Q5VV41 709 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 PIGSQ96S52 555 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 LZTS2Q9BRK4 669 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 PXMP2Q9NR77 195 aa18.23■□□□□ 0.51
HDAC4-213ENST00000496347 TIMP1P01033 207 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 CALM1P0DP23 149 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 CALM2P0DP24 149 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 CALM3P0DP25 149 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 ITGB8P26012 769 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 SMARCA1P28370 1054 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 FPGSQ05932 587 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 ITGA7Q13683 1181 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 STXBP2Q15833 593 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 TMEM63BQ5T3F8 832 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 NFXL1Q6ZNB6 911 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 TBC1D5Q92609 795 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 TAAR1Q96RJ0 339 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 CDH23Q9H251 3354 aa18.22■□□□□ 0.51
HDAC4-213ENST00000496347 TANC1Q9C0D5 1861 aa18.21■□□□□ 0.51
HDAC4-213ENST00000496347 CCDC69A6NI79 296 aa18.21■□□□□ 0.51
HDAC4-213ENST00000496347 KPNA6O60684 536 aa18.21■□□□□ 0.51
HDAC4-213ENST00000496347 CD4P01730 458 aa18.21■□□□□ 0.51
HDAC4-213ENST00000496347 NEFLP07196 543 aa18.21■□□□□ 0.51
HDAC4-213ENST00000496347 TXNP10599 105 aaKnown RBP18.21■□□□□ 0.51
HDAC4-213ENST00000496347 EIF2AK2P19525 551 aaKnown RBP18.21■□□□□ 0.51
HDAC4-213ENST00000496347 GNAQP50148 359 aa18.21■□□□□ 0.51
HDAC4-213ENST00000496347 PURAQ00577 322 aaKnown RBP18.21■□□□□ 0.51
HDAC4-213ENST00000496347 A6NJR5 290 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 GCOM1H8Y6P7 765 aaPredicted RBP18.2■□□□□ 0.5
HDAC4-213ENST00000496347 EIF3JO75822 258 aaKnown RBP18.2■□□□□ 0.5
HDAC4-213ENST00000496347 ARIH2O95376 493 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 POLR2MP0CAP2 368 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 CCDC62Q6P9F0 684 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 SGMS1Q86VZ5 419 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 RRP36Q96EU6 259 aaKnown RBP18.2■□□□□ 0.5
HDAC4-213ENST00000496347 MTG1Q9BT17 334 aaPredicted RBP18.2■□□□□ 0.5
HDAC4-213ENST00000496347 MYL10Q9BUA6 226 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 GPHNQ9NQX3 736 aaPredicted RBP18.2■□□□□ 0.5
HDAC4-213ENST00000496347 SEC63Q9UGP8 760 aaKnown RBP18.2■□□□□ 0.5
HDAC4-213ENST00000496347 SLC12A7Q9Y666 1083 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 GRIN2DO15399 1336 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 FRMPD4Q14CM0 1322 aa18.2■□□□□ 0.5
HDAC4-213ENST00000496347 NR3C2P08235 984 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 KRT32Q14532 448 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 SHHQ15465 462 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 TSGA10IPQ3SY00 556 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 C9orf50Q5SZB4 431 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 MFSD5Q6N075 450 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 EMID1Q96A84 441 aaPredicted RBP18.19■□□□□ 0.5
HDAC4-213ENST00000496347 PDCD2LQ9BRP1 358 aa18.19■□□□□ 0.5
HDAC4-213ENST00000496347 GH1P01241 217 aa18.18■□□□□ 0.5
HDAC4-213ENST00000496347 HOXA13P31271 388 aaPredicted RBP18.18■□□□□ 0.5
HDAC4-213ENST00000496347 PSMC6P62333 389 aa18.18■□□□□ 0.5
HDAC4-213ENST00000496347 PPIGQ13427 754 aaKnown RBP eCLIP18.18■□□□□ 0.57e-9■■□□□ 13.7
HDAC4-213ENST00000496347 SEPT14Q6ZU15 432 aa18.18■□□□□ 0.5
HDAC4-213ENST00000496347 RNPC3Q96LT9 517 aaKnown RBP18.18■□□□□ 0.5
HDAC4-213ENST00000496347 ALDH8A1Q9H2A2 487 aaPredicted RBP18.18■□□□□ 0.5
HDAC4-213ENST00000496347 MYH7BA7E2Y1 1941 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 B4GALT4O60513 344 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 MYL3P08590 195 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 ARHGAP1Q07960 439 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 COL9A3Q14050 684 aaPredicted RBP18.17■□□□□ 0.5
HDAC4-213ENST00000496347 PGM5Q15124 567 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 NFRKBQ6P4R8 1299 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 KCNV1Q6PIU1 500 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 TMEM199Q8N511 208 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 COPS5Q92905 334 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 NEK1Q96PY6 1258 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 HIPK3Q9H422 1215 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 MRVI1Q9Y6F6 885 aa18.17■□□□□ 0.5
HDAC4-213ENST00000496347 PIK3CDO00329 1044 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 PLEKHA8P1O95397 391 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 MMP3P08254 477 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms