RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 GNPTABQ3T906 1256 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 TBC1D10BQ4KMP7 808 aaPredicted RBP7.07□□□□□ -1.28
VPS50-219ENST00000495039 ADAT2Q7Z6V5 191 aaKnown RBP7.07□□□□□ -1.28
VPS50-219ENST00000495039 FAM124AQ86V42 546 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 PHAXQ9H814 394 aaKnown RBP7.07□□□□□ -1.28
VPS50-219ENST00000495039 NPHS1O60500 1241 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 PPP1R11O60927 126 aaPredicted RBP7.06□□□□□ -1.28
VPS50-219ENST00000495039 C8BP07358 591 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 RPL13P26373 211 aaKnown RBP7.06□□□□□ -1.28
VPS50-219ENST00000495039 GRB10Q13322 594 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 FAM26FQ5R3K3 315 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 BORAQ6PGQ7 559 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 ETV3LQ6ZN32 361 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 DCP2Q8IU60 420 aaKnown RBP7.06□□□□□ -1.28
VPS50-219ENST00000495039 LGI4Q8N135 537 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 GORASP1Q9BQQ3 440 aa7.06□□□□□ -1.28
VPS50-219ENST00000495039 C11orf84Q9BUA3 381 aaPredicted RBP7.06□□□□□ -1.28
VPS50-219ENST00000495039 CGGBP1Q9UFW8 167 aaPredicted RBP7.06□□□□□ -1.28
VPS50-219ENST00000495039 NTRK1P04629 796 aa7.05□□□□□ -1.28
VPS50-219ENST00000495039 THBS2P35442 1172 aa7.05□□□□□ -1.28
VPS50-219ENST00000495039 KYQ8NBH2 561 aa7.05□□□□□ -1.28
VPS50-219ENST00000495039 CHST13Q8NET6 341 aa7.05□□□□□ -1.28
VPS50-219ENST00000495039 CRBNQ96SW2 442 aa7.05□□□□□ -1.28
VPS50-219ENST00000495039 C7orf72A4D263 438 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 EPHX1P07099 455 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 SLC7A5Q01650 507 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 COL9A2Q14055 689 aaPredicted RBP7.04□□□□□ -1.28
VPS50-219ENST00000495039 ZNF394Q53GI3 561 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 LDLRAD1Q5T700 205 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 ARHGEF39Q8N4T4 335 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 SLC16A11Q8NCK7 471 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 AP5M1Q9H0R1 490 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 INVSQ9Y283 1065 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 SIT1Q9Y3P8 196 aa7.04□□□□□ -1.28
VPS50-219ENST00000495039 MROH6A6NGR9 719 aa7.03□□□□□ -1.28
VPS50-219ENST00000495039 SUV39H1O43463 412 aa7.03□□□□□ -1.28
VPS50-219ENST00000495039 FUCA1P04066 466 aa7.03□□□□□ -1.28
VPS50-219ENST00000495039 ZC3H18Q86VM9 953 aaKnown RBP7.03□□□□□ -1.28
VPS50-219ENST00000495039 TTLL6Q8N841 843 aa7.03□□□□□ -1.28
VPS50-219ENST00000495039 DVL3Q92997 716 aaPredicted RBP7.03□□□□□ -1.28
VPS50-219ENST00000495039 RCC1LQ96I51 464 aaKnown RBP7.03□□□□□ -1.28
VPS50-219ENST00000495039 FGD4Q96M96 766 aa7.03□□□□□ -1.28
VPS50-219ENST00000495039 GZF1Q9H116 711 aaPredicted RBP7.03□□□□□ -1.28
VPS50-219ENST00000495039 METTL5Q9NRN9 209 aaKnown RBP7.03□□□□□ -1.28
VPS50-219ENST00000495039 PCDHGB7Q9Y5F8 929 aa7.03□□□□□ -1.28
VPS50-219ENST00000495039 ZNF536O15090 1300 aa7.02□□□□□ -1.28
VPS50-219ENST00000495039 FSHBP01225 129 aa7.02□□□□□ -1.29
VPS50-219ENST00000495039 FANCCQ00597 558 aa7.02□□□□□ -1.29
VPS50-219ENST00000495039 GLB1LQ6UWU2 654 aa7.02□□□□□ -1.29
VPS50-219ENST00000495039 CCDC81Q6ZN84 652 aa7.02□□□□□ -1.29
VPS50-219ENST00000495039 MIB1Q86YT6 1006 aa7.02□□□□□ -1.29
VPS50-219ENST00000495039 C19orf47Q8N9M1 422 aaKnown RBP7.02□□□□□ -1.29
VPS50-219ENST00000495039 SUGT1Q9Y2Z0 365 aa7.02□□□□□ -1.29
VPS50-219ENST00000495039 MCTP2Q6DN12 878 aa7.01□□□□□ -1.29
VPS50-219ENST00000495039 CD300LDQ6UXZ3 194 aa7.01□□□□□ -1.29
VPS50-219ENST00000495039 MARCH2Q9P0N8 246 aa7.01□□□□□ -1.29
VPS50-219ENST00000495039 PCDHB10Q9UN67 800 aa7.01□□□□□ -1.29
VPS50-219ENST00000495039 EIF6P56537 245 aaKnown RBP7□□□□□ -1.29
VPS50-219ENST00000495039 C9orf131Q5VYM1 1079 aa7□□□□□ -1.29
VPS50-219ENST00000495039 TXNDC5Q8NBS9 432 aaKnown RBP7□□□□□ -1.29
VPS50-219ENST00000495039 OR6P1Q8NGX9 317 aa7□□□□□ -1.29
VPS50-219ENST00000495039 PLEKHO2Q8TD55 490 aa7□□□□□ -1.29
VPS50-219ENST00000495039 SYT3Q9BQG1 590 aa7□□□□□ -1.29
VPS50-219ENST00000495039 SSBP3Q9BWW4 388 aaPredicted RBP7□□□□□ -1.29
VPS50-219ENST00000495039 CLEC1BQ9P126 229 aa7□□□□□ -1.29
VPS50-219ENST00000495039 A0A1W2PQH9 124 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 C6P13671 934 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 ITGA1P56199 1179 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 SURF1Q15526 300 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 FAM26EQ8N5C1 309 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 KLHL6Q8WZ60 621 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 SEC14L1Q92503 715 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 KISS1RQ969F8 398 aaPredicted RBP6.99□□□□□ -1.29
VPS50-219ENST00000495039 LCORQ96JN0 433 aaPredicted RBP6.99□□□□□ -1.29
VPS50-219ENST00000495039 SPATA32Q96LK8 384 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 SORCS2Q96PQ0 1159 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 MMP19Q99542 508 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 ST6GALNAC2Q9UJ37 374 aa6.99□□□□□ -1.29
VPS50-219ENST00000495039 SGSM2O43147 1006 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 PLS3P13797 630 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 TACR2P21452 398 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 PRR31Q5SQ13 230 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 MBLAC2Q68D91 279 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 PLEKHH3Q7Z736 793 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 CRACR2BQ8N4Y2 399 aaPredicted RBP6.98□□□□□ -1.29
VPS50-219ENST00000495039 COPS5Q92905 334 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 BACH2Q9BYV9 841 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 NGRNQ9NPE2 291 aaKnown RBP6.98□□□□□ -1.29
VPS50-219ENST00000495039 GINM1Q9NU53 330 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 DDX41Q9UJV9 622 aaKnown RBP6.98□□□□□ -1.29
VPS50-219ENST00000495039 AKT3Q9Y243 479 aa6.98□□□□□ -1.29
VPS50-219ENST00000495039 C9orf118A6NHY6 69 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 DDX3XO00571 662 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS50-219ENST00000495039 LAMTOR5O43504 91 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 THBDP07204 575 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 GDF5P43026 501 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 SLC6A11P48066 632 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 SOX9P48436 509 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 GIPRP48546 466 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 RACK1P63244 317 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms