RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 SAMD3Q8N6K7 520 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 IGDCC4Q8TDY8 1250 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 MORC4Q8TE76 937 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 BADQ92934 168 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 TOX2Q96NM4 488 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 MAP3K14Q99558 947 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 MYL10Q9BUA6 226 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 LRRC2Q9BYS8 371 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 KATNBL1Q9H079 304 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 SENP2Q9HC62 589 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 PDLIM7Q9NR12 457 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 PPP4R2Q9NY27 417 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 GNEQ9Y223 722 aaKnown RBP10.55□□□□□ -0.72
HDAC6-232ENST00000489053 NOD1Q9Y239 953 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 MRVI1Q9Y6F6 885 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 PLXNA1Q9UIW2 1896 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 ASTN1O14525 1302 aa10.55□□□□□ -0.72
HDAC6-232ENST00000489053 ADCY6O43306 1168 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 KPNA6O60684 536 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 EIF3JO75822 258 aaKnown RBP10.54□□□□□ -0.72
HDAC6-232ENST00000489053 GH1P01241 217 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 CCND2P30279 289 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 HOXA13P31271 388 aaPredicted RBP10.54□□□□□ -0.72
HDAC6-232ENST00000489053 FPGSQ05932 587 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 ITGA7Q13683 1181 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 NECTIN1Q15223 517 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 GNPTABQ3T906 1256 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 ANKRD33Q7Z3H0 272 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 SMARCC2Q8TAQ2 1214 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 TAAR1Q96RJ0 339 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 MTG1Q9BT17 334 aaPredicted RBP10.54□□□□□ -0.72
HDAC6-232ENST00000489053 SPZ1Q9BXG8 430 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 RIOX1Q9H6W3 641 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 PXMP2Q9NR77 195 aa10.54□□□□□ -0.72
HDAC6-232ENST00000489053 ZNFX1Q9P2E3 1918 aaKnown RBP10.53□□□□□ -0.72
HDAC6-232ENST00000489053 ZBTB43O43298 467 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 NR3C2P08235 984 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 RXRAP19793 462 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 EDNRBP24530 442 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 PSMA5P28066 241 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 ERICH6BQ5W0A0 696 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 CCSAPQ6IQ19 270 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-232ENST00000489053 KCNV1Q6PIU1 500 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 DHX32Q7L7V1 743 aaKnown RBP10.53□□□□□ -0.72
HDAC6-232ENST00000489053 HEATR3Q7Z4Q2 680 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 RAB11FIP4Q86YS3 637 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 CCDC82Q8N4S0 544 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 TMEM199Q8N511 208 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 TBC1D5Q92609 795 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 JAKMIP1Q96N16 626 aaKnown RBP10.53□□□□□ -0.72
HDAC6-232ENST00000489053 EHMT1Q9H9B1 1298 aa10.53□□□□□ -0.72
HDAC6-232ENST00000489053 RBM28Q9NW13 759 aaKnown RBP10.53□□□□□ -0.72
HDAC6-232ENST00000489053 RBM47A0AV96 593 aaKnown RBP10.52□□□□□ -0.73
HDAC6-232ENST00000489053 TRIM43BA6NCK2 446 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 GOLGA8AA7E2F4 631 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 GOLGA8BA8MQT2 603 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 KIAA0355O15063 1070 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 SUPT20HL2P0C7V6 817 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 SMARCA1P28370 1054 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 HSD17B4P51659 736 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 IRX5P78411 483 aaPredicted RBP10.52□□□□□ -0.73
HDAC6-232ENST00000489053 PPIGQ13427 754 aaKnown RBP eCLIP10.52□□□□□ -0.737e-8■■■□□ 17
HDAC6-232ENST00000489053 RTN1Q16799 776 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 BLOC1S2Q6QNY1 142 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 SH3RF1Q7Z6J0 888 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 DHX37Q8IY37 1157 aaKnown RBP10.52□□□□□ -0.73
HDAC6-232ENST00000489053 FANCBQ8NB91 859 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 TRIM43Q96BQ3 446 aaPredicted RBP10.52□□□□□ -0.73
HDAC6-232ENST00000489053 MTMR8Q96EF0 704 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 PPP1R12CQ9BZL4 782 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 PRO3102Q9H379 93 aa10.52□□□□□ -0.73
HDAC6-232ENST00000489053 FRMPD3Q5JV73 1810 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 KLF18A0A0U1RQI7 1052 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 CCDC196A0A1B0GTZ2 297 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 SPDYE3A6NKU9 549 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 NOP56O00567 594 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 EIF5BO60841 1220 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 PPP1R11O60927 126 aaPredicted RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 PLEKHA8P1O95397 391 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 TIMP1P01033 207 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 CASTP20810 708 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 METAP2P50579 478 aaKnown RBP eCLIP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 PSMC6P62333 389 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 NKX3-2P78367 333 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 AKAP17AQ02040 695 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 FAAP100Q0VG06 881 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 LAMC2Q13753 1193 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 DGKDQ16760 1214 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 LY6KQ17RY6 165 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 LRIT3Q3SXY7 679 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 CMTR1Q8N1G2 835 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 COPS5Q92905 334 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 RNPC3Q96LT9 517 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 TCEANC2Q96MN5 208 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 MTIF3Q9H2K0 278 aaKnown RBP10.51□□□□□ -0.73
HDAC6-232ENST00000489053 HIPK3Q9H422 1215 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 PSTPIP2Q9H939 334 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 MLXIPQ9HAP2 919 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 COL20A1Q9P218 1284 aa10.51□□□□□ -0.73
HDAC6-232ENST00000489053 CYTH3O43739 400 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms