RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MAPKAPK5Q8IW41 473 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 INTS9Q9NV88 658 aaKnown RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 CETN2P41208 172 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 KLK7P49862 253 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 CTSWP56202 376 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 UAP1Q16222 522 aaPredicted RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 LBHD1Q9BQE6 289 aaPredicted RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 PKD2L1Q9P0L9 805 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 PTPN22Q9Y2R2 807 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 MYO1EQ12965 1108 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 FAM98CQ17RN3 349 aaKnown RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 CCNI2Q6ZMN8 369 aaPredicted RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 FMNL3Q8IVF7 1028 aa14.86□□□□□ -0.03
USP42-206ENST00000479544 ELAC2Q9BQ52 826 aaKnown RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 DMGDHQ9UI17 866 aaKnown RBP14.86□□□□□ -0.03
USP42-206ENST00000479544 KIAA1210Q9ULL0 1709 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 CD44P16070 742 aaKnown RBP14.85□□□□□ -0.03
USP42-206ENST00000479544 PLCG1P19174 1290 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 LIFRP42702 1097 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 ERVK-24P63145 666 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 RSRC2Q7L4I2 434 aaKnown RBP14.85□□□□□ -0.03
USP42-206ENST00000479544 OSBPL9Q96SU4 736 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 EMBQ6PCB8 327 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 CCDC197Q8NCU1 140 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 ARL8AQ96BM9 186 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 IFT74Q96LB3 600 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 CCDC77Q9BR77 488 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 ZNF219Q9P2Y4 722 aaPredicted RBP14.85□□□□□ -0.03
USP42-206ENST00000479544 COL3A1P02461 1466 aaPredicted RBP14.85□□□□□ -0.03
USP42-206ENST00000479544 LGALS16A8MUM7 142 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 PALMO75781 387 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 FLOT1O75955 427 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 RASGRF1Q13972 1273 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 FAM167BQ9BTA0 163 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 DDX47Q9H0S4 455 aaKnown RBP14.85□□□□□ -0.03
USP42-206ENST00000479544 ZBTB21Q9ULJ3 1066 aa14.85□□□□□ -0.03
USP42-206ENST00000479544 AHDC1Q5TGY3 1603 aaPredicted RBP14.85□□□□□ -0.03
USP42-206ENST00000479544 ABL1P00519 1130 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 ATG9AQ7Z3C6 839 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 MYOCDQ8IZQ8 938 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 KCNB2Q92953 911 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 NDST4Q9H3R1 872 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 PSD3Q9NYI0 1048 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 TSKSQ9UJT2 592 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 STMN4Q9H169 189 aaPredicted RBP14.84□□□□□ -0.03
USP42-206ENST00000479544 GPR108Q9NPR9 543 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 TMOD1P28289 359 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 HS2ST1Q7LGA3 356 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 REXO1Q8N1G1 1221 aaKnown RBP14.84□□□□□ -0.03
USP42-206ENST00000479544 KLHL29Q96CT2 875 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 LACRTQ9GZZ8 138 aa14.84□□□□□ -0.03
USP42-206ENST00000479544 OR52Z1P0C646 297 aa14.83□□□□□ -0.03
USP42-206ENST00000479544 CARSP49589 748 aaKnown RBP14.83□□□□□ -0.03
USP42-206ENST00000479544 MAGOHP61326 146 aaKnown RBP14.83□□□□□ -0.03
USP42-206ENST00000479544 VPS72Q15906 364 aa14.83□□□□□ -0.03
USP42-206ENST00000479544 ALS2CLQ60I27 953 aa14.83□□□□□ -0.03
USP42-206ENST00000479544 MAGOHBQ96A72 148 aaKnown RBP14.83□□□□□ -0.03
USP42-206ENST00000479544 GOLPH3Q9H4A6 298 aa14.83□□□□□ -0.03
USP42-206ENST00000479544 KLC4Q9NSK0 619 aa14.83□□□□□ -0.03
USP42-206ENST00000479544 ASAP1Q9ULH1 1129 aa14.83□□□□□ -0.03
USP42-206ENST00000479544 LRRC53A6NM62 1247 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 STX2P32856 288 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 NLRP14Q86W24 1093 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 NBPF5PQ86XG9 351 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 TAB3Q8N5C8 712 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 TBK1Q9UHD2 729 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 AMFRQ9UKV5 643 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 SUFUQ9UMX1 484 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 CD163L1Q9NR16 1453 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 H7C1W4 665 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 EIF3HO15372 352 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP42-206ENST00000479544 CYP27B1O15528 508 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 FAM13AO94988 1023 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 SLC8A1P32418 973 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 LONP1P36776 959 aaKnown RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 ZBTB38Q8NAP3 1195 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 KCNV2Q8TDN2 545 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 TGFBRAP1Q8WUH2 860 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 KLRF2D3W0D1 207 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 MEFVO15553 781 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 PLEKP08567 350 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 H2AFZP0C0S5 128 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 CCNE1P24864 410 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 MKRN4PQ13434 485 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 ADAM9Q13443 819 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 MTMR3Q13615 1198 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 H2AFVQ71UI9 128 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 SPATS2Q86XZ4 545 aaKnown RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 GJA10Q969M2 543 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 CCT8L2Q96SF2 557 aa14.83□□□□□ -0.04
USP42-206ENST00000479544 ARPP21Q9UBL0 812 aaPredicted RBP14.83□□□□□ -0.04
USP42-206ENST00000479544 HIP1RO75146 1068 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 FCER1AP12319 257 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 DDX42Q86XP3 938 aaKnown RBP eCLIP14.82□□□□□ -0.04
USP42-206ENST00000479544 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.82□□□□□ -0.04
USP42-206ENST00000479544 MTUS1Q9ULD2 1270 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 USP31Q70CQ4 1352 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 LDHCP07864 332 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 SEL1L2Q5TEA6 688 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 TRIM7Q9C029 511 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms