RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-223	ENST00000476519	EIF3J	O75822	258 aa	Known RBP	14	□□□□□ -0.17
SYNE1-223	ENST00000476519	CD4	P01730	458 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	TXN	P10599	105 aa	Known RBP	14	□□□□□ -0.17
SYNE1-223	ENST00000476519	HSD17B4	P51659	736 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	ANTXR2	P58335	489 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	FPGS	Q05932	587 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	ARHGEF16	Q5VV41	709 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	MFSD5	Q6N075	450 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	DEFB123	Q8N688	67 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	TMEM87B	Q96K49	555 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	LZTS2	Q9BRK4	669 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	SENP2	Q9HC62	589 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	GPHN	Q9NQX3	736 aa	Predicted RBP	14	□□□□□ -0.17
SYNE1-223	ENST00000476519	COL20A1	Q9P218	1284 aa		14	□□□□□ -0.17
SYNE1-223	ENST00000476519	GRIN2D	O15399	1336 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	SLC27A2	O14975	620 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	DDAH1	O94760	285 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	CFB	P00751	764 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	KIF5B	P33176	963 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	GNAQ	P50148	359 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	C9orf50	Q5SZB4	431 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	RNF20	Q5VTR2	975 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	CREB3L3	Q68CJ9	461 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	CCDC62	Q6P9F0	684 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	OR6J1	Q8NGC5	347 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	PIGS	Q96S52	555 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	MTG1	Q9BT17	334 aa	Predicted RBP	13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	LY9	Q9HBG7	655 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	ANO2	Q9NQ90	1003 aa		13.99	□□□□□ -0.17
SYNE1-223	ENST00000476519	OPLAH	O14841	1288 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	PRC1	O43663	620 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	CYTH3	O43739	400 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	PPP1R11	O60927	126 aa	Predicted RBP	13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	NR3C2	P08235	984 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	SUPT20HL2	P0C7V6	817 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	PTGS1	P23219	599 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	LIFR	P42702	1097 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	PURA	Q00577	322 aa	Known RBP	13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	PPIG	Q13427	754 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	SLC35G1	Q2M3R5	365 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	HOMER1	Q86YM7	354 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	TMEM199	Q8N511	208 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	CTCFL	Q8NI51	663 aa	Predicted RBP	13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	PXMP2	Q9NR77	195 aa		13.98	□□□□□ -0.17
SYNE1-223	ENST00000476519	LAMA4	Q16363	1823 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	MYL3	P08590	195 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	POLR2M	P0CAP2	368 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	CALM1	P0DP23	149 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	CALM2	P0DP24	149 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	CALM3	P0DP25	149 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	EPHB4	P54760	987 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	SMAD3	P84022	425 aa	Known RBP	13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	KCNV1	Q6PIU1	500 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	SEPT14	Q6ZU15	432 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	VSIG10L	Q86VR7	867 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	ZNF654	Q8IZM8	581 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	SPZ1	Q9BXG8	430 aa		13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	DDX41	Q9UJV9	622 aa	Known RBP	13.97	□□□□□ -0.17
SYNE1-223	ENST00000476519	MCM3AP	O60318	1980 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	CCDC69	A6NI79	296 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	SH2B2	O14492	632 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	ARIH2	O95376	493 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	GH1	P01241	217 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	EIF2AK2	P19525	551 aa	Known RBP	13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	PSMC6	P62333	389 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	TSGA10IP	Q3SY00	556 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	NFRKB	Q6P4R8	1299 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	NFXL1	Q6ZNB6	911 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	COPS5	Q92905	334 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	EMID1	Q96A84	441 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	RRP36	Q96EU6	259 aa	Known RBP	13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	CCDC136	Q96JN2	1154 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	RNPC3	Q96LT9	517 aa	Known RBP	13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	PDCD2L	Q9BRP1	358 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	TRPV6	Q9H1D0	765 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519	MTMR10	Q9NXD2	777 aa		13.96	□□□□□ -0.17
SYNE1-223	ENST00000476519		A0A0C4DFX4	3053 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	CDC45	O75419	566 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	TGFB3	P10600	412 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	PTPN11	Q06124	597 aa	Predicted RBP	13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	LAMC2	Q13753	1193 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	LY6K	Q17RY6	165 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	SGMS1	Q86VZ5	419 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	NEK1	Q96PY6	1258 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	HIPK3	Q9H422	1215 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	SLC12A7	Q9Y666	1083 aa		13.95	□□□□□ -0.18
SYNE1-223	ENST00000476519	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	B4GALT4	O60513	344 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	CSF2RA	P15509	400 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	CAST	P20810	708 aa	Known RBP	13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	HOXA13	P31271	388 aa	Predicted RBP	13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	CYP2C18	P33260	490 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	ARHGAP1	Q07960	439 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	NBPF20	Q3BBV1	942 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	SYNE3	Q6ZMZ3	975 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519		Q7L0L9	218 aa		13.94	□□□□□ -0.18
SYNE1-223	ENST00000476519	C16orf59	Q7L2K0	433 aa		13.94	□□□□□ -0.18

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