RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 METAP2P50579 478 aaKnown RBP eCLIP16.41■□□□□ 0.22
VAMP4-203ENST00000474047 GJA9P57773 515 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 KCNA10Q16322 511 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 TLK2Q86UE8 772 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 SMARCC2Q8TAQ2 1214 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 PHF24Q9UPV7 400 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 OPLAHO14841 1288 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 ADCY6O43306 1168 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 ZEB2O60315 1214 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 MYCLP12524 364 aaPredicted RBP16.4■□□□□ 0.22
VAMP4-203ENST00000474047 ACLYP53396 1101 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 RCAN1P53805 252 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 PPP2R5BQ15173 497 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 SLC39A5Q6ZMH5 540 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 HEATR3Q7Z4Q2 680 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 SCFD2Q8WU76 684 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 ZSWIM6Q9HCJ5 1215 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 PXMP2Q9NR77 195 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 ATP11BQ9Y2G3 1177 aa16.4■□□□□ 0.22
VAMP4-203ENST00000474047 MOXD2PA6NHM9 499 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 EDNRBP24530 442 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 SEPT14Q6ZU15 432 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 KLHDC9Q8NEP7 349 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 TM6SF1Q9BZW5 370 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 UPF3AQ9H1J1 476 aaKnown RBP16.39■□□□□ 0.21
VAMP4-203ENST00000474047 Q9Y3F1 56 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 A0A1W2PQ45 241 aaPredicted RBP16.39■□□□□ 0.21
VAMP4-203ENST00000474047 A0A1W2PQY0 241 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 NR3C2P08235 984 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 RTP1P59025 263 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 BEX3Q00994 111 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 TTLL4Q14679 1199 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 DUSP28Q4G0W2 176 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 GLT1D1Q96MS3 346 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 UPF3BQ9BZI7 483 aaKnown RBP16.39■□□□□ 0.21
VAMP4-203ENST00000474047 STARD7Q9NQZ5 370 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 PRKAG2Q9UGJ0 569 aa16.39■□□□□ 0.21
VAMP4-203ENST00000474047 ZMYND8Q9ULU4 1186 aaPredicted RBP16.39■□□□□ 0.21
VAMP4-203ENST00000474047 GNEQ9Y223 722 aaKnown RBP16.39■□□□□ 0.21
VAMP4-203ENST00000474047 V9GY48 417 aaPredicted RBP16.39■□□□□ 0.21
VAMP4-203ENST00000474047 MYADML2A6NDP7 307 aa16.38■□□□□ 0.21
VAMP4-203ENST00000474047 EIF3JO75822 258 aaKnown RBP16.38■□□□□ 0.21
VAMP4-203ENST00000474047 ASGR1P07306 291 aa16.38■□□□□ 0.21
VAMP4-203ENST00000474047 TXNP10599 105 aaKnown RBP16.38■□□□□ 0.21
VAMP4-203ENST00000474047 CST5P28325 142 aaPredicted RBP16.38■□□□□ 0.21
VAMP4-203ENST00000474047 AKAP17AQ02040 695 aaKnown RBP16.38■□□□□ 0.21
VAMP4-203ENST00000474047 GHRHRQ02643 423 aa16.38■□□□□ 0.21
VAMP4-203ENST00000474047 FSCN1Q16658 493 aaKnown RBP16.38■□□□□ 0.21
VAMP4-203ENST00000474047 BRDTQ58F21 947 aaPredicted RBP16.38■□□□□ 0.21
VAMP4-203ENST00000474047 OR6J1Q8NGC5 347 aa16.38■□□□□ 0.21
VAMP4-203ENST00000474047 PSTPIP2Q9H939 334 aa16.38■□□□□ 0.21
VAMP4-203ENST00000474047 PDRG1Q9NUG6 133 aa16.38■□□□□ 0.21
VAMP4-203ENST00000474047 RBM47A0AV96 593 aaKnown RBP16.37■□□□□ 0.21
VAMP4-203ENST00000474047 NKRFO15226 690 aaKnown RBP eCLIP16.37■□□□□ 0.21
VAMP4-203ENST00000474047 SYN1P17600 705 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 CDC27P30260 824 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 CCND2P30279 289 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 ADD1P35611 737 aaKnown RBP16.37■□□□□ 0.21
VAMP4-203ENST00000474047 IRX5P78411 483 aaPredicted RBP16.37■□□□□ 0.21
VAMP4-203ENST00000474047 FBXL16Q8N461 479 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 GPKOWQ92917 476 aaPredicted RBP eCLIP16.37■□□□□ 0.21
VAMP4-203ENST00000474047 PDCD2LQ9BRP1 358 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 MKI67P46013 3256 aaKnown RBP16.37■□□□□ 0.21
VAMP4-203ENST00000474047 ALPK3Q96L96 1907 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 CNTNAP5Q8WYK1 1306 aa16.37■□□□□ 0.21
VAMP4-203ENST00000474047 NAPAP54920 295 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 PGM5Q15124 567 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 TMEM63BQ5T3F8 832 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 USP17L6PQ6QN14 398 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 LRRC37A2A6NM11 1700 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 PTGS1P23219 599 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 CPT1AP50416 773 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 ANAPC15P60006 121 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 TRIM60Q495X7 471 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 CCSAPQ6IQ19 270 aaPredicted RBP16.36■□□□□ 0.21
VAMP4-203ENST00000474047 AGXT2Q9BYV1 514 aa16.36■□□□□ 0.21
VAMP4-203ENST00000474047 FAM217BQ9NTX9 383 aaPredicted RBP16.36■□□□□ 0.21
VAMP4-203ENST00000474047 CCT2P78371 535 aaKnown RBP16.35■□□□□ 0.21
VAMP4-203ENST00000474047 PRDM5Q9NQX1 630 aaPredicted RBP16.35■□□□□ 0.21
VAMP4-203ENST00000474047 MRVI1Q9Y6F6 885 aa16.35■□□□□ 0.21
VAMP4-203ENST00000474047 ELP1O95163 1332 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 SPDYE3A6NKU9 549 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 CABYRO75952 493 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 MYL3P08590 195 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 PDIA3P30101 505 aaKnown RBP16.34■□□□□ 0.21
VAMP4-203ENST00000474047 NKX3-2P78367 333 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 TOB2Q14106 344 aaPredicted RBP16.34■□□□□ 0.21
VAMP4-203ENST00000474047 CXCL17Q6UXB2 119 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 CHRDL2Q6WN34 429 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 VSIG10LQ86VR7 867 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 COPS5Q92905 334 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 LBHD1Q9BQE6 289 aaPredicted RBP16.34■□□□□ 0.21
VAMP4-203ENST00000474047 LARP6Q9BRS8 491 aaKnown RBP16.34■□□□□ 0.21
VAMP4-203ENST00000474047 POLR3EQ9NVU0 708 aa16.34■□□□□ 0.21
VAMP4-203ENST00000474047 RBM27Q9P2N5 1060 aaKnown RBP16.34■□□□□ 0.21
VAMP4-203ENST00000474047 A0A0U1RQG5 324 aaPredicted RBP16.33■□□□□ 0.21
VAMP4-203ENST00000474047 DCDC2CA8MYV0 355 aa16.33■□□□□ 0.21
VAMP4-203ENST00000474047 hCG_1984214I3L0E3 225 aa16.33■□□□□ 0.21
VAMP4-203ENST00000474047 PIK3CDO00329 1044 aa16.33■□□□□ 0.21
VAMP4-203ENST00000474047 CPLX1O14810 134 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms