RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TEX2Q8IWB9 1127 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 CCDC83Q8IWF9 413 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 NSUN7Q8NE18 718 aaKnown RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 TRPV1Q8NER1 839 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 CCDC12Q8WUD4 166 aaPredicted RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 MPHOSPH6Q99547 160 aaKnown RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 TMEM106CQ9BVX2 250 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 GLT8D2Q9H1C3 349 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 ABHD16BQ9H3Z7 469 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 RIC8AQ9NPQ8 531 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 PAK6Q9NQU5 681 aaPredicted RBP13.74□□□□□ -0.21
VPS13D-204ENST00000469054 SMCHD1A6NHR9 2005 aa13.74□□□□□ -0.21
VPS13D-204ENST00000469054 ESYT2A0FGR8 921 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 GJB1P08034 283 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 EDNRBP24530 442 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 ADCY7P51828 1080 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 ACVR2BQ13705 512 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 ARHGEF16Q5VV41 709 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 TMX3Q96JJ7 454 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 IWS1Q96ST2 819 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 ZMYND12Q9H0C1 365 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 SH3GLB2Q9NR46 395 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 PXMP2Q9NR77 195 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 VPS54Q9P1Q0 977 aa13.73□□□□□ -0.21
VPS13D-204ENST00000469054 ORC3Q9UBD5 711 aaPredicted RBP13.73□□□□□ -0.21
VPS13D-204ENST00000469054 DDX49Q9Y6V7 483 aaKnown RBP13.73□□□□□ -0.21
VPS13D-204ENST00000469054 SEPT4O43236 478 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 DTNBO60941 627 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 NR3C2P08235 984 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 FDPSP14324 419 aaKnown RBP13.72□□□□□ -0.21
VPS13D-204ENST00000469054 EIF2AK2P19525 551 aaKnown RBP13.72□□□□□ -0.21
VPS13D-204ENST00000469054 CNGA1P29973 690 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 GNA11P29992 359 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 PDE4DQ08499 809 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 UBE2SQ16763 222 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 CCDC148Q8NFR7 591 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 SHISA4Q96DD7 197 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 AIFM3Q96NN9 605 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 DEFB118Q96PH6 123 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 PDCD2LQ9BRP1 358 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 LLPHQ9BRT6 129 aaKnown RBP13.72□□□□□ -0.21
VPS13D-204ENST00000469054 KATNBL1Q9H079 304 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 C6orf50Q9HD87 102 aa13.72□□□□□ -0.21
VPS13D-204ENST00000469054 ZHX1Q9UKY1 873 aaPredicted RBP13.72□□□□□ -0.21
VPS13D-204ENST00000469054 HTTP42858 3142 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 JAK2O60674 1132 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 MSCO60682 206 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 NLRP5P59047 1200 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 STXBP2Q15833 593 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 EEPD1Q7L9B9 569 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 FAM177A1Q8N128 213 aaPredicted RBP13.71□□□□□ -0.21
VPS13D-204ENST00000469054 U2AF1L4Q8WU68 220 aaKnown RBP13.71□□□□□ -0.21
VPS13D-204ENST00000469054 WASF1Q92558 559 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 VTA1Q9NP79 307 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 DDX20Q9UHI6 824 aaKnown RBP13.71□□□□□ -0.21
VPS13D-204ENST00000469054 FAM184BQ9ULE4 1060 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 PCDHA6Q9UN73 950 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 PCDHA8Q9Y5H6 950 aa13.71□□□□□ -0.21
VPS13D-204ENST00000469054 POTEFA5A3E0 1075 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 SPDYE3A6NKU9 549 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 SGPL1O95470 568 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 FOSP01100 380 aaPredicted RBP13.7□□□□□ -0.22
VPS13D-204ENST00000469054 AKR1A1P14550 325 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 XBP1P17861 261 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 GJA8P48165 433 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 CLK2P49760 499 aaKnown RBP13.7□□□□□ -0.22
VPS13D-204ENST00000469054 AP3B2Q13367 1082 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 PGM5Q15124 567 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 LHX8Q68G74 356 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 TAPT1Q6NXT6 567 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 VSIG10LQ86VR7 867 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 FBXO16Q8IX29 292 aaPredicted RBP13.7□□□□□ -0.22
VPS13D-204ENST00000469054 BICD2Q8TD16 824 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 ALG1Q9BT22 464 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 PDGFCQ9NRA1 345 aa13.7□□□□□ -0.22
VPS13D-204ENST00000469054 FRMPD4Q14CM0 1322 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 ZNFX1Q9P2E3 1918 aaKnown RBP13.69□□□□□ -0.22
VPS13D-204ENST00000469054 EIF3JO75822 258 aaKnown RBP13.69□□□□□ -0.22
VPS13D-204ENST00000469054 MYCLP12524 364 aaPredicted RBP13.69□□□□□ -0.22
VPS13D-204ENST00000469054 CCND2P30279 289 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 SOX10P56693 466 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 HMGN5P82970 282 aaKnown RBP13.69□□□□□ -0.22
VPS13D-204ENST00000469054 CCDC144BQ3MJ40 725 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 JAKMIP3Q5VZ66 844 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 GALNT17Q6IS24 598 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 CRISPLD2Q9H0B8 497 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 PCDHA4Q9UN74 947 aa13.69□□□□□ -0.22
VPS13D-204ENST00000469054 RBM47A0AV96 593 aaKnown RBP13.68□□□□□ -0.22
VPS13D-204ENST00000469054 ADAMTS3O15072 1205 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 TFRCP02786 760 aaKnown RBP13.68□□□□□ -0.22
VPS13D-204ENST00000469054 RARBP10826 455 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 CAPN2P17655 700 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 EN2P19622 333 aaPredicted RBP13.68□□□□□ -0.22
VPS13D-204ENST00000469054 ADCYAP1R1P41586 468 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 TNFAIP2Q03169 654 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 ANO1Q5XXA6 986 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 MCTP2Q6DN12 878 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 IQSEC1Q6DN90 963 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 REXO1Q8N1G1 1221 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms