RNA–Protein interactions for RNA: ENST00000467553.2

CCHCR1-211, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 589 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-211ENST00000467553 KPNA6O60684 536 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 SUPT20HL2P0C7V6 817 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 IRX5P78411 483 aaPredicted RBP16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 COL9A3Q14050 684 aaPredicted RBP16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 CDC37Q16543 378 aaPredicted RBP16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 TMEM240Q5SV17 173 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 RASIP1Q5U651 963 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 FBXO16Q8IX29 292 aaPredicted RBP16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 RASEFQ8IZ41 740 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 TMTC2Q8N394 836 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 CLEC4DQ8WXI8 215 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 TMEM87BQ96K49 555 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 NEK1Q96PY6 1258 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.34■□□□□ 0.214e-9■■□□□ 13.8
CCHCR1-211ENST00000467553 LRRC2Q9BYS8 371 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 WDR11Q9BZH6 1224 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 TTYH1Q9H313 450 aaPredicted RBP16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 JMJD4Q9H9V9 463 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 LY9Q9HBG7 655 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 IL23AQ9NPF7 189 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 PDGFCQ9NRA1 345 aa16.34■□□□□ 0.21
CCHCR1-211ENST00000467553 MYH6P13533 1939 aa16.33■□□□□ 0.21
CCHCR1-211ENST00000467553 PALM3A6NDB9 673 aaPredicted RBP16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 CCDC69A6NI79 296 aa16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 NFIBO00712 420 aa16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 GRM4Q14833 912 aa16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 EEPD1Q7L9B9 569 aa16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 RPUSD2Q8IZ73 545 aaKnown RBP16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 PURBQ96QR8 312 aaKnown RBP16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 HIPK3Q9H422 1215 aa16.33■□□□□ 0.2
CCHCR1-211ENST00000467553 SH2B2O14492 632 aaPredicted RBP16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 REC8O95072 547 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 CSF2RAP15509 400 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 EDNRBP24530 442 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 DNAJB2P25686 324 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 RPS6P62753 249 aaKnown RBP16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 PDE4DQ08499 809 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 TROAPQ12815 778 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 QRICH1Q2TAL8 776 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 ADCK5Q3MIX3 580 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 FBXO11Q86XK2 927 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 ZNF654Q8IZM8 581 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 MAFAQ8NHW3 353 aaPredicted RBP16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 SCFD2Q8WU76 684 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 HERVK_113Q902F9 699 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 MTA3Q9BTC8 594 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 MYL10Q9BUA6 226 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 EYSQ5T1H1 3165 aa16.32■□□□□ 0.2
CCHCR1-211ENST00000467553 BAZ2BQ9UIF8 2168 aaKnown RBP16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 GRIN2DO15399 1336 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 ABCB11O95342 1321 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 PFKMP08237 780 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 FOSL2P15408 326 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 CALML3P27482 149 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 KRT32Q14532 448 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 PPP2R5BQ15173 497 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 TSGA10IPQ3SY00 556 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 C16orf59Q7L2K0 433 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 MCF2L2Q86YR7 1114 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 TIFAQ96CG3 184 aa16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 MTG1Q9BT17 334 aaPredicted RBP16.31■□□□□ 0.2
CCHCR1-211ENST00000467553 FGBP02675 491 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 LIFRP42702 1097 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 PTPN11Q06124 597 aaPredicted RBP16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 RAB30Q15771 203 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 ZNF365Q70YC5 407 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 DHX32Q7L7V1 743 aaKnown RBP16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 HOMER1Q86YM7 354 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 RAB11FIP4Q86YS3 637 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 OR6J1Q8NGC5 347 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 CTCFLQ8NI51 663 aaPredicted RBP16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 PIBF1Q8WXW3 757 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 TBC1D5Q92609 795 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 TCEANC2Q96MN5 208 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 IWS1Q96ST2 819 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 PPP1R12CQ9BZL4 782 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 ALDH8A1Q9H2A2 487 aaPredicted RBP16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 ZNF576Q9H609 170 aa16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 DDX49Q9Y6V7 483 aaKnown RBP16.3■□□□□ 0.2
CCHCR1-211ENST00000467553 B4GALT4O60513 344 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 RXRAP19793 462 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 CYP2C18P33260 490 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 HSPA4P34932 840 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 PURAQ00577 322 aaKnown RBP16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 EXOSC10Q01780 885 aaKnown RBP16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 TTLL4Q14679 1199 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 NFRKBQ6P4R8 1299 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 SLC30A10Q6XR72 485 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 SYNE3Q6ZMZ3 975 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 SAMD3Q8N6K7 520 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 MYLIPQ8WY64 445 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 PIGSQ96S52 555 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 NOC4LQ9BVI4 516 aaKnown RBP16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 AMNQ9BXJ7 453 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 RIOX1Q9H6W3 641 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 MAP3K20Q9NYL2 800 aaKnown RBP16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 MSRAQ9UJ68 235 aa16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 MRPL11Q9Y3B7 192 aaKnown RBP16.29■□□□□ 0.2
CCHCR1-211ENST00000467553 SNX14Q9Y5W7 946 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms