RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 NEDD4P46934 1319 aa26.54■■□□□ 1.84
USP4-208ENST00000464168 KPNA6O60684 536 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 TXNP10599 105 aaKnown RBP26.53■■□□□ 1.84
USP4-208ENST00000464168 ATP2A2P16615 1042 aaKnown RBP26.53■■□□□ 1.84
USP4-208ENST00000464168 SDSP20132 328 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 USH1GQ495M9 461 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 FAM47CQ5HY64 1035 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 NFRKBQ6P4R8 1299 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 DEFB128Q7Z7B8 93 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 DGKHQ86XP1 1220 aa26.53■■□□□ 1.84
USP4-208ENST00000464168 ARIH2O95376 493 aa26.52■■□□□ 1.84
USP4-208ENST00000464168 PPP2R2DQ66LE6 453 aa26.52■■□□□ 1.84
USP4-208ENST00000464168 RAD50Q92878 1312 aa26.52■■□□□ 1.84
USP4-208ENST00000464168 ASB2Q96Q27 587 aa26.52■■□□□ 1.84
USP4-208ENST00000464168 THEGQ9P2T0 379 aa26.52■■□□□ 1.84
USP4-208ENST00000464168 SCN10AQ9Y5Y9 1956 aa26.51■■□□□ 1.83
USP4-208ENST00000464168 REV3LO60673 3130 aa26.51■■□□□ 1.83
USP4-208ENST00000464168 B4DLN1 442 aa26.51■■□□□ 1.83
USP4-208ENST00000464168 MRPL12P52815 198 aaKnown RBP26.51■■□□□ 1.83
USP4-208ENST00000464168 MFAP1P55081 439 aaKnown RBP26.51■■□□□ 1.83
USP4-208ENST00000464168 TBC1D5Q92609 795 aa26.51■■□□□ 1.83
USP4-208ENST00000464168 GBF1Q92538 1859 aa26.51■■□□□ 1.83
USP4-208ENST00000464168 TNFRSF10AO00220 468 aa26.5■■□□□ 1.83
USP4-208ENST00000464168 ZNF213O14771 459 aa26.5■■□□□ 1.83
USP4-208ENST00000464168 CCDC62Q6P9F0 684 aa26.5■■□□□ 1.83
USP4-208ENST00000464168 SMC5Q8IY18 1101 aa26.5■■□□□ 1.83
USP4-208ENST00000464168 PITPNM1O00562 1244 aa26.49■■□□□ 1.83
USP4-208ENST00000464168 PTPN11Q06124 597 aaPredicted RBP26.49■■□□□ 1.83
USP4-208ENST00000464168 B4GALNT3Q6L9W6 998 aa26.49■■□□□ 1.83
USP4-208ENST00000464168 PNMA1Q8ND90 353 aa26.49■■□□□ 1.83
USP4-208ENST00000464168 ANKS1AQ92625 1134 aa26.49■■□□□ 1.83
USP4-208ENST00000464168 XIRP2A4UGR9 3374 aa26.49■■□□□ 1.83
USP4-208ENST00000464168 KDM4AO75164 1064 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 IQCF3P0C7M6 154 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 RFC2P35250 354 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 MRPS5P82675 430 aaKnown RBP26.48■■□□□ 1.83
USP4-208ENST00000464168 CDC37Q16543 378 aaPredicted RBP26.48■■□□□ 1.83
USP4-208ENST00000464168 PLEKHM2Q8IWE5 1019 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 ADGRF4Q8IZF3 695 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 RETREG2Q8NC44 543 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 TAAR1Q96RJ0 339 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 MAF1Q9H063 256 aa26.48■■□□□ 1.83
USP4-208ENST00000464168 ACTN1P12814 892 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 NT5C2P49902 561 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 CCDC178Q5BJE1 867 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 TMEM67Q5HYA8 995 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 IQCA1Q86XH1 822 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 SYTL5Q8TDW5 730 aaPredicted RBP26.47■■□□□ 1.83
USP4-208ENST00000464168 AFG1LQ8WV93 481 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 OSBPL3Q9H4L5 887 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 COL20A1Q9P218 1284 aa26.47■■□□□ 1.83
USP4-208ENST00000464168 ABCB11O95342 1321 aa26.46■■□□□ 1.83
USP4-208ENST00000464168 CWC27Q6UX04 472 aaKnown RBP26.46■■□□□ 1.83
USP4-208ENST00000464168 NSUN6Q8TEA1 469 aaKnown RBP26.46■■□□□ 1.83
USP4-208ENST00000464168 KAT14Q9H8E8 782 aa26.46■■□□□ 1.83
USP4-208ENST00000464168 SCN5AQ14524 2016 aa26.46■■□□□ 1.83
USP4-208ENST00000464168 B4E1Z4 1266 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 CA3P07451 260 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 CHMP4BP1P59074 171 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 BFSP2Q13515 415 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 LY6KQ17RY6 165 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 SEPT14Q6ZU15 432 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 CHD1LQ86WJ1 897 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 ENAHQ8N8S7 591 aaPredicted RBP26.45■■□□□ 1.82
USP4-208ENST00000464168 CTAGE1Q96RT6 745 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 ZSCAN10Q96SZ4 725 aaPredicted RBP26.45■■□□□ 1.82
USP4-208ENST00000464168 RWDD1Q9H446 243 aaPredicted RBP26.45■■□□□ 1.82
USP4-208ENST00000464168 ZSWIM5Q9P217 1185 aa26.45■■□□□ 1.82
USP4-208ENST00000464168 ARHGAP1Q07960 439 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 AAMPQ13685 434 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 ASPRV1Q53RT3 343 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 PHOSPHO2Q8TCD6 241 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 ADAMTS19Q8TE59 1207 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 IWS1Q96ST2 819 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 SLC9A7Q96T83 725 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 RMDN3Q96TC7 470 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 FTOQ9C0B1 505 aaKnown RBP eCLIP26.44■■□□□ 1.82
USP4-208ENST00000464168 NOD1Q9Y239 953 aa26.44■■□□□ 1.82
USP4-208ENST00000464168 RFXAPO00287 272 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 GH1P01241 217 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 MMP3P08254 477 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 NUCB1Q02818 461 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 STXBP2Q15833 593 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 PTGISQ16647 500 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 QRICH1Q2TAL8 776 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 MCF2L2Q86YR7 1114 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 MICALL1Q8N3F8 863 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 KAT2BQ92831 832 aa26.43■■□□□ 1.82
USP4-208ENST00000464168 PRRC2BQ5JSZ5 2229 aaKnown RBP26.43■■□□□ 1.82
USP4-208ENST00000464168 IGHDP01880 384 aa26.42■■□□□ 1.82
USP4-208ENST00000464168 POU3F3P20264 500 aaPredicted RBP26.42■■□□□ 1.82
USP4-208ENST00000464168 GDF6Q6KF10 455 aaPredicted RBP26.42■■□□□ 1.82
USP4-208ENST00000464168 SESTD1Q86VW0 696 aa26.42■■□□□ 1.82
USP4-208ENST00000464168 JMJD4Q9H9V9 463 aa26.42■■□□□ 1.82
USP4-208ENST00000464168 CERS4Q9HA82 394 aa26.42■■□□□ 1.82
USP4-208ENST00000464168 VAT1LQ9HCJ6 419 aa26.42■■□□□ 1.82
USP4-208ENST00000464168 DIAPH3Q9NSV4 1193 aa26.42■■□□□ 1.82
USP4-208ENST00000464168 TET1Q8NFU7 2136 aa26.41■■□□□ 1.82
USP4-208ENST00000464168 PARP1P09874 1014 aaKnown RBP26.41■■□□□ 1.82
USP4-208ENST00000464168 CHST3Q7LGC8 479 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms