RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 TET1Q8NFU7 2136 aa20.33■□□□□ 0.85
HMGN1-209ENST00000463631 BMP1P13497 986 aa20.33■□□□□ 0.85
HMGN1-209ENST00000463631 FAM47CQ5HY64 1035 aa20.33■□□□□ 0.85
HMGN1-209ENST00000463631 DEFB128Q7Z7B8 93 aa20.33■□□□□ 0.85
HMGN1-209ENST00000463631 TTC14Q96N46 770 aa20.33■□□□□ 0.85
HMGN1-209ENST00000463631 TOMM22Q9NS69 142 aa20.33■□□□□ 0.85
HMGN1-209ENST00000463631 A0A0D9SFI3 127 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 B4DLN1 442 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 IQCF3P0C7M6 154 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 MRPL12P52815 198 aaKnown RBP20.32■□□□□ 0.84
HMGN1-209ENST00000463631 BFSP2Q13515 415 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 RRP12Q5JTH9 1297 aaKnown RBP20.32■□□□□ 0.84
HMGN1-209ENST00000463631 RGS22Q8NE09 1264 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 MTCH2Q9Y6C9 303 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 LAMA4Q16363 1823 aa20.32■□□□□ 0.84
HMGN1-209ENST00000463631 PTPRSQ13332 1948 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 BRWD1Q9NSI6 2320 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 GTPBP6O43824 516 aaPredicted RBP20.31■□□□□ 0.84
HMGN1-209ENST00000463631 BAIAP3O94812 1187 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 TXNP10599 105 aaKnown RBP20.31■□□□□ 0.84
HMGN1-209ENST00000463631 HSPD1P10809 573 aaKnown RBP20.31■□□□□ 0.84
HMGN1-209ENST00000463631 PDE1AP54750 535 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 MCMDC2Q4G0Z9 681 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 GPATCH4Q5T3I0 446 aaKnown RBP20.31■□□□□ 0.84
HMGN1-209ENST00000463631 HERC6Q8IVU3 1022 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 RETREG2Q8NC44 543 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 FAM227BQ96M60 508 aa20.31■□□□□ 0.84
HMGN1-209ENST00000463631 TCF20Q9UGU0 1960 aaKnown RBP20.3■□□□□ 0.84
HMGN1-209ENST00000463631 COL4A4P53420 1690 aaPredicted RBP20.3■□□□□ 0.84
HMGN1-209ENST00000463631 TFF2Q03403 129 aa20.3■□□□□ 0.84
HMGN1-209ENST00000463631 TAP1Q03518 808 aa20.3■□□□□ 0.84
HMGN1-209ENST00000463631 CCDC62Q6P9F0 684 aa20.3■□□□□ 0.84
HMGN1-209ENST00000463631 SESTD1Q86VW0 696 aa20.3■□□□□ 0.84
HMGN1-209ENST00000463631 MICALL1Q8N3F8 863 aa20.3■□□□□ 0.84
HMGN1-209ENST00000463631 COPS5Q92905 334 aa20.3■□□□□ 0.84
HMGN1-209ENST00000463631 KIAA1217Q5T5P2 1943 aa20.29■□□□□ 0.84
HMGN1-209ENST00000463631 ARIH2O95376 493 aa20.29■□□□□ 0.84
HMGN1-209ENST00000463631 NT5C2P49902 561 aa20.29■□□□□ 0.84
HMGN1-209ENST00000463631 ZNF589Q86UQ0 364 aaPredicted RBP20.29■□□□□ 0.84
HMGN1-209ENST00000463631 CCDC155Q8N6L0 562 aa20.29■□□□□ 0.84
HMGN1-209ENST00000463631 CAGE1Q8TC20 777 aa20.29■□□□□ 0.84
HMGN1-209ENST00000463631 ZBTB47Q9UFB7 747 aaPredicted RBP20.29■□□□□ 0.84
HMGN1-209ENST00000463631 CCDC171Q6TFL3 1326 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 TRIP12Q14669 1992 aaPredicted RBP20.28■□□□□ 0.84
HMGN1-209ENST00000463631 EPOPA6NHQ4 379 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 RBL2Q08999 1139 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 MFSD6Q6ZSS7 791 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 AFAP1L1Q8TED9 768 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 CTAGE1Q96RT6 745 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 COG5Q9UP83 839 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 NOD1Q9Y239 953 aa20.28■□□□□ 0.84
HMGN1-209ENST00000463631 KIF28PB7ZC32 967 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 ARHGEF15O94989 841 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 KCNQ1P51787 676 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 HAND2P61296 217 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 ANKRD45Q5TZF3 282 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 TBC1D10CQ8IV04 446 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 NECAB3Q96P71 396 aaPredicted RBP20.27■□□□□ 0.84
HMGN1-209ENST00000463631 C1QTNF1Q9BXJ1 281 aa20.27■□□□□ 0.84
HMGN1-209ENST00000463631 FTOQ9C0B1 505 aaKnown RBP eCLIP20.27■□□□□ 0.847e-6■■□□□ 12.9
HMGN1-209ENST00000463631 RNF41Q9H4P4 317 aaPredicted RBP20.27■□□□□ 0.84
HMGN1-209ENST00000463631 RFXAPO00287 272 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 MMP3P08254 477 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 ARHGAP1Q07960 439 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 NMIQ13287 307 aaPredicted RBP20.26■□□□□ 0.83
HMGN1-209ENST00000463631 SKIV2LQ15477 1246 aaKnown RBP20.26■□□□□ 0.83
HMGN1-209ENST00000463631 PTGISQ16647 500 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 USH1GQ495M9 461 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 DGKHQ86XP1 1220 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 PPP1R13LQ8WUF5 828 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 AFG1LQ8WV93 481 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 ESR2Q92731 530 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 CERS4Q9HA82 394 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 ABCB11O95342 1321 aa20.26■□□□□ 0.83
HMGN1-209ENST00000463631 PARNO95453 639 aaKnown RBP20.25■□□□□ 0.83
HMGN1-209ENST00000463631 GH1P01241 217 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 KCNJ6P48051 423 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 NSUN6Q8TEA1 469 aaKnown RBP20.25■□□□□ 0.83
HMGN1-209ENST00000463631 ARNTL2Q8WYA1 636 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 KAT2BQ92831 832 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 RAPGEFL1Q9UHV5 662 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 MYH6P13533 1939 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 NEDD4P46934 1319 aa20.25■□□□□ 0.83
HMGN1-209ENST00000463631 LPXNO60711 386 aa20.24■□□□□ 0.83
HMGN1-209ENST00000463631 SELPP16109 830 aa20.24■□□□□ 0.83
HMGN1-209ENST00000463631 WDR5P61964 334 aaKnown RBP20.24■□□□□ 0.83
HMGN1-209ENST00000463631 HDAC1Q13547 482 aaPredicted RBP20.24■□□□□ 0.83
HMGN1-209ENST00000463631 GPNMBQ14956 572 aa20.24■□□□□ 0.83
HMGN1-209ENST00000463631 CDC37Q16543 378 aaPredicted RBP20.24■□□□□ 0.83
HMGN1-209ENST00000463631 SYTL5Q8TDW5 730 aaPredicted RBP20.24■□□□□ 0.83
HMGN1-209ENST00000463631 EMID1Q96A84 441 aaPredicted RBP20.24■□□□□ 0.83
HMGN1-209ENST00000463631 IWS1Q96ST2 819 aa20.24■□□□□ 0.83
HMGN1-209ENST00000463631 TLL1O43897 1013 aa20.23■□□□□ 0.83
HMGN1-209ENST00000463631 CXCL10P02778 98 aa20.23■□□□□ 0.83
HMGN1-209ENST00000463631 GOLGA8HP0CJ92 632 aa20.23■□□□□ 0.83
HMGN1-209ENST00000463631 PLA2G5P39877 138 aa20.23■□□□□ 0.83
HMGN1-209ENST00000463631 MFAP1P55081 439 aaKnown RBP20.23■□□□□ 0.83
HMGN1-209ENST00000463631 GRB10Q13322 594 aa20.23■□□□□ 0.83
HMGN1-209ENST00000463631 CCDC178Q5BJE1 867 aa20.23■□□□□ 0.83
HMGN1-209ENST00000463631 KRT40Q6A162 431 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms