RNA–Protein interactions for RNA: ENST00000457039.6

SMPD4-215, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-215ENST00000457039 NSUN6Q8TEA1 469 aaKnown RBP16.25■□□□□ 0.19
SMPD4-215ENST00000457039 CUL5Q93034 780 aa16.25■□□□□ 0.19
SMPD4-215ENST00000457039 TMX3Q96JJ7 454 aa16.25■□□□□ 0.19
SMPD4-215ENST00000457039 RMDN3Q96TC7 470 aa16.25■□□□□ 0.19
SMPD4-215ENST00000457039 LLPHQ9BRT6 129 aaKnown RBP16.25■□□□□ 0.19
SMPD4-215ENST00000457039 ZMYND12Q9H0C1 365 aa16.25■□□□□ 0.19
SMPD4-215ENST00000457039 HMX1Q9NP08 348 aaPredicted RBP16.25■□□□□ 0.19
SMPD4-215ENST00000457039 PXMP2Q9NR77 195 aa16.25■□□□□ 0.19
SMPD4-215ENST00000457039 VPS54Q9P1Q0 977 aa16.25■□□□□ 0.19
SMPD4-215ENST00000457039 ORC3Q9UBD5 711 aaPredicted RBP16.25■□□□□ 0.19
SMPD4-215ENST00000457039 MYCP01106 439 aaPredicted RBP16.24■□□□□ 0.19
SMPD4-215ENST00000457039 CLK2P49760 499 aaKnown RBP16.24■□□□□ 0.19
SMPD4-215ENST00000457039 ADCY7P51828 1080 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 MRPL12P52815 198 aaKnown RBP16.24■□□□□ 0.19
SMPD4-215ENST00000457039 UBE2SQ16763 222 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 FCHSD1Q86WN1 690 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 FAM177A1Q8N128 213 aaPredicted RBP16.24■□□□□ 0.19
SMPD4-215ENST00000457039 CCDC12Q8WUD4 166 aaPredicted RBP16.24■□□□□ 0.19
SMPD4-215ENST00000457039 IWS1Q96ST2 819 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.24■□□□□ 0.19
SMPD4-215ENST00000457039 GLT8D2Q9H1C3 349 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 ABHD16BQ9H3Z7 469 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 MCM3APO60318 1980 aa16.24■□□□□ 0.19
SMPD4-215ENST00000457039 ADAMTS3O15072 1205 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 EIF2AK2P19525 551 aaKnown RBP16.23■□□□□ 0.19
SMPD4-215ENST00000457039 ACVR2BQ13705 512 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 NPY5RQ15761 445 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 ARHGEF16Q5VV41 709 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 CCDC148Q8NFR7 591 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 PDCD2LQ9BRP1 358 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 RNF208Q9H0X6 261 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 CNPY2Q9Y2B0 182 aa16.23■□□□□ 0.19
SMPD4-215ENST00000457039 SEPT4O43236 478 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 GJB1P08034 283 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 NR3C2P08235 984 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 PGM5Q15124 567 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 TAPT1Q6NXT6 567 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 IL31RAQ8NI17 732 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 MPHOSPH6Q99547 160 aaKnown RBP16.22■□□□□ 0.19
SMPD4-215ENST00000457039 C6orf50Q9HD87 102 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 VTA1Q9NP79 307 aa16.22■□□□□ 0.19
SMPD4-215ENST00000457039 B4DLN1 442 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 GNA11P29992 359 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 PDE4DQ08499 809 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 LHX8Q68G74 356 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 VSIG10LQ86VR7 867 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 FBXO16Q8IX29 292 aaPredicted RBP16.21■□□□□ 0.19
SMPD4-215ENST00000457039 WASF1Q92558 559 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 SNX21Q969T3 373 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 ALG1Q9BT22 464 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 PHF20Q9BVI0 1012 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 DDX20Q9UHI6 824 aaKnown RBP16.21■□□□□ 0.19
SMPD4-215ENST00000457039 ZHX1Q9UKY1 873 aaPredicted RBP16.21■□□□□ 0.19
SMPD4-215ENST00000457039 PCDHA6Q9UN73 950 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 PCDHA8Q9Y5H6 950 aa16.21■□□□□ 0.19
SMPD4-215ENST00000457039 RBM47A0AV96 593 aaKnown RBP16.2■□□□□ 0.18
SMPD4-215ENST00000457039 POTEFA5A3E0 1075 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 CCDC85CA6NKD9 419 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 M0R2N6 131 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 ADCY6O43306 1168 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 FOSP01100 380 aaPredicted RBP16.2■□□□□ 0.18
SMPD4-215ENST00000457039 AKR1A1P14550 325 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 GJA8P48165 433 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 HMGN5P82970 282 aaKnown RBP16.2■□□□□ 0.18
SMPD4-215ENST00000457039 AP3B2Q13367 1082 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 CUL4AQ13619 759 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 EEPD1Q7L9B9 569 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 DAGLBQ8NCG7 672 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 DEFB118Q96PH6 123 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 TMEM106CQ9BVX2 250 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 CRISPLD2Q9H0B8 497 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 PDGFCQ9NRA1 345 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 GJB4Q9NTQ9 266 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 TMEM260Q9NX78 707 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 PCDHA4Q9UN74 947 aa16.2■□□□□ 0.18
SMPD4-215ENST00000457039 SPDYE3A6NKU9 549 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 MSCO60682 206 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 EIF3JO75822 258 aaKnown RBP16.19■□□□□ 0.18
SMPD4-215ENST00000457039 SGPL1O95470 568 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 CNGA1P29973 690 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 NLRP5P59047 1200 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 MRPS9P82933 396 aaKnown RBP16.19■□□□□ 0.18
SMPD4-215ENST00000457039 STXBP2Q15833 593 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 CCDC144BQ3MJ40 725 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 GALNT17Q6IS24 598 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 REXO1Q8N1G1 1221 aaKnown RBP16.19■□□□□ 0.18
SMPD4-215ENST00000457039 BICD2Q8TD16 824 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 U2AF1L4Q8WU68 220 aaKnown RBP16.19■□□□□ 0.18
SMPD4-215ENST00000457039 PGBD1Q96JS3 809 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 ANO3Q9BYT9 981 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 KCNJ14Q9UNX9 436 aa16.19■□□□□ 0.18
SMPD4-215ENST00000457039 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-215ENST00000457039 RGS20O76081 388 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 XBP1P17861 261 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 CCND2P30279 289 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 ADCYAP1R1P41586 468 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 JAKMIP3Q5VZ66 844 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 PCNX4Q63HM2 1172 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 MCTP2Q6DN12 878 aa16.18■□□□□ 0.18
SMPD4-215ENST00000457039 XRRA1Q6P2D8 792 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms