RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CCDC194A0A1B0GVG4 234 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 B4DLN1 442 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 HOXC6P09630 235 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 PRMT2P55345 433 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 NR5A1Q13285 461 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 ARHGEF16Q5VV41 709 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 NSUN6Q8TEA1 469 aaKnown RBP18.04■□□□□ 0.48
USP40-206ENST00000443711 MPHOSPH6Q99547 160 aaKnown RBP18.04■□□□□ 0.48
USP40-206ENST00000443711 ANO3Q9BYT9 981 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 SRRDQ9UH36 339 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 MTMR6Q9Y217 621 aa18.04■□□□□ 0.48
USP40-206ENST00000443711 CEP350Q5VT06 3117 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 LOC102724159A0A0B4J2E5 919 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 SOWAHBA6NEL2 793 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 CYP2B6P20813 491 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 U2AF2P26368 475 aaKnown RBP eCLIP18.03■□□□□ 0.48
USP40-206ENST00000443711 CAP1Q01518 475 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 NONOQ15233 471 aaKnown RBP eCLIP18.03■□□□□ 0.48
USP40-206ENST00000443711 PWP2Q15269 919 aaKnown RBP18.03■□□□□ 0.48
USP40-206ENST00000443711 ZNF467Q7Z7K2 595 aaPredicted RBP18.03■□□□□ 0.48
USP40-206ENST00000443711 TNFRSF25Q93038 417 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 PURBQ96QR8 312 aaKnown RBP18.03■□□□□ 0.48
USP40-206ENST00000443711 IWS1Q96ST2 819 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 PXMP2Q9NR77 195 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 GABRQQ9UN88 632 aa18.03■□□□□ 0.48
USP40-206ENST00000443711 ASB14A6NK59 587 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 XRCC5P13010 732 aaKnown RBP18.02■□□□□ 0.48
USP40-206ENST00000443711 EIF2AK2P19525 551 aaKnown RBP18.02■□□□□ 0.48
USP40-206ENST00000443711 FLT3LGP49771 235 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 ALDH5A1P51649 535 aaPredicted RBP18.02■□□□□ 0.48
USP40-206ENST00000443711 LBX1P52954 281 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 PRKCZQ05513 592 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 NOSTRINQ8IVI9 506 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 NPLOC4Q8TAT6 608 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 PGBD1Q96JS3 809 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 APBA2Q99767 749 aa18.02■□□□□ 0.48
USP40-206ENST00000443711 MYH7BA7E2Y1 1941 aa18.02■□□□□ 0.47
USP40-206ENST00000443711 FRMPD4Q14CM0 1322 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 RPTORQ8N122 1335 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 KIF28PB7ZC32 967 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 ZSCAN22P10073 491 aaPredicted RBP18.01■□□□□ 0.47
USP40-206ENST00000443711 DDIT3P35638 169 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 SREBF1P36956 1147 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 IRF5Q13568 498 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 XRRA1Q6P2D8 792 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 PIK3AP1Q6ZUJ8 805 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 TRMT44Q8IYL2 757 aaKnown RBP18.01■□□□□ 0.47
USP40-206ENST00000443711 MAML3Q96JK9 1138 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 FGD4Q96M96 766 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 PDCD2LQ9BRP1 358 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 TRIM17Q9Y577 477 aa18.01■□□□□ 0.47
USP40-206ENST00000443711 NR3C2P08235 984 aa18■□□□□ 0.47
USP40-206ENST00000443711 CCND2P30279 289 aa18■□□□□ 0.47
USP40-206ENST00000443711 UBXN2AP68543 259 aa18■□□□□ 0.47
USP40-206ENST00000443711 NUCB2P80303 420 aa18■□□□□ 0.47
USP40-206ENST00000443711 PGM5Q15124 567 aa18■□□□□ 0.47
USP40-206ENST00000443711 OTOP1Q7RTM1 612 aa18■□□□□ 0.47
USP40-206ENST00000443711 BRAPQ7Z569 592 aa18■□□□□ 0.47
USP40-206ENST00000443711 FERMT3Q86UX7 667 aa18■□□□□ 0.47
USP40-206ENST00000443711 MSL3Q8N5Y2 521 aaKnown RBP18■□□□□ 0.47
USP40-206ENST00000443711 TBCKQ8TEA7 893 aa18■□□□□ 0.47
USP40-206ENST00000443711 ZSCAN16Q9H4T2 348 aaPredicted RBP18■□□□□ 0.47
USP40-206ENST00000443711 CIZ1Q9ULV3 898 aaPredicted RBP18■□□□□ 0.47
USP40-206ENST00000443711 MCM3APO60318 1980 aa18■□□□□ 0.47
USP40-206ENST00000443711 ASTN1O14525 1302 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 MYCLP12524 364 aaPredicted RBP17.99■□□□□ 0.47
USP40-206ENST00000443711 USP11P51784 963 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 ARHGAP4P98171 946 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 PDE4DQ08499 809 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 STXBP2Q15833 593 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 INF2Q27J81 1249 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 EARS2Q5JPH6 523 aaKnown RBP17.99■□□□□ 0.47
USP40-206ENST00000443711 PCNX4Q63HM2 1172 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 OLFML2BQ68BL8 750 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 MAMDC4Q6UXC1 1216 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 VSIG10LQ86VR7 867 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 RAET1EQ8TD07 263 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 MORC4Q8TE76 937 aa17.99■□□□□ 0.47
USP40-206ENST00000443711 NOL7Q9UMY1 257 aaKnown RBP17.99■□□□□ 0.47
USP40-206ENST00000443711 FAM205CA6NFA0 338 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 BRD1O95696 1058 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 F13A1P00488 732 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 CYP3A4P08684 503 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 EDNRBP24530 442 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 RESTQ13127 1097 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 PKP1Q13835 747 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 FOXD4L5Q5VV16 416 aaPredicted RBP17.98■□□□□ 0.47
USP40-206ENST00000443711 NEK8Q86SG6 692 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 IL31RAQ8NI17 732 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 CRYGNQ8WXF5 182 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 FOXD4L4Q8WXT5 416 aaPredicted RBP17.98■□□□□ 0.47
USP40-206ENST00000443711 NAP1L4Q99733 375 aaKnown RBP17.98■□□□□ 0.47
USP40-206ENST00000443711 TINF2Q9BSI4 451 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 SYNGAP1Q96PV0 1343 aa17.98■□□□□ 0.47
USP40-206ENST00000443711 ADCY3O60266 1144 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 EIF3JO75822 258 aaKnown RBP17.97■□□□□ 0.47
USP40-206ENST00000443711 STAM2O75886 525 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 ZNF76P36508 570 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 CCL14Q16627 93 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 ARMCX2Q7L311 632 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms