RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 KIF5BP33176 963 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 ITGA7Q13683 1181 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 CREB3L3Q68CJ9 461 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 SEPT14Q6ZU15 432 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 ZNF654Q8IZM8 581 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 PIBF1Q8WXW3 757 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 PIGSQ96S52 555 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 RBM47A0AV96 593 aaKnown RBP23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 CDC45O75419 566 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 DDAH1O94760 285 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 ITGB8P26012 769 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 TROAPQ12815 778 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 SHHQ15465 462 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 STXBP2Q15833 593 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 GPR153Q6NV75 609 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 FAM126BQ8IXS8 530 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 IWS1Q96ST2 819 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 MYL10Q9BUA6 226 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 PPP1R12CQ9BZL4 782 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 COL20A1Q9P218 1284 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 TBX21Q9UL17 535 aa23.02■■□□□ 1.28
SHROOM1-204ENST00000440118 TIMP1P01033 207 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 CDK7P50613 346 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 PSMC6P62333 389 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 C9orf50Q5SZB4 431 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 DEFB123Q8N688 67 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 IGDCC4Q8TDY8 1250 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 MTMR8Q96EF0 704 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 TMEM87BQ96K49 555 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 RNPC3Q96LT9 517 aaKnown RBP23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 SEZ6LQ9BYH1 1024 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 LY9Q9HBG7 655 aa23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 SEC63Q9UGP8 760 aaKnown RBP23.01■■□□□ 1.27
SHROOM1-204ENST00000440118 PPP1R11O60927 126 aaPredicted RBP23■■□□□ 1.27
SHROOM1-204ENST00000440118 TMTC2Q8N394 836 aa23■■□□□ 1.27
SHROOM1-204ENST00000440118 MTA3Q9BTC8 594 aa23■■□□□ 1.27
SHROOM1-204ENST00000440118 RIOX1Q9H6W3 641 aa23■■□□□ 1.27
SHROOM1-204ENST00000440118 PXMP2Q9NR77 195 aa23■■□□□ 1.27
SHROOM1-204ENST00000440118 PNMA6FA0A0J9YX94 578 aa22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 HOXA13P31271 388 aaPredicted RBP22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 CHMP4BP1P59074 171 aa22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 FAM47CQ5HY64 1035 aa22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 TMEM199Q8N511 208 aa22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 COPS5Q92905 334 aa22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 RRP36Q96EU6 259 aaKnown RBP22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 MTG1Q9BT17 334 aaPredicted RBP22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 MAP3K20Q9NYL2 800 aaKnown RBP22.99■■□□□ 1.27
SHROOM1-204ENST00000440118 MYH7BA7E2Y1 1941 aa22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 GCOM1H8Y6P7 765 aaPredicted RBP22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 SH2B2O14492 632 aaPredicted RBP22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 POLR2MP0CAP2 368 aa22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 MYCLP12524 364 aaPredicted RBP22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 HSD17B4P51659 736 aa22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 PPIGQ13427 754 aaKnown RBP eCLIP22.98■■□□□ 1.277e-7■■■■□ 21
SHROOM1-204ENST00000440118 Q7L0L9 218 aa22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 SLC12A7Q9Y666 1083 aa22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 MRVI1Q9Y6F6 885 aa22.98■■□□□ 1.27
SHROOM1-204ENST00000440118 CYTH3O43739 400 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 KPNA6O60684 536 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 GH1P01241 217 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 NR3C2P08235 984 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 CALM1P0DP23 149 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 CALM2P0DP24 149 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 CALM3P0DP25 149 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 GNAQP50148 359 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 PURAQ00577 322 aaKnown RBP22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 NECTIN1Q15223 517 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 MFSD5Q6N075 450 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 FCHSD1Q86WN1 690 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 SAMD3Q8N6K7 520 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 MAP3K14Q99558 947 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 LZTS2Q9BRK4 669 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 LRRC2Q9BYS8 371 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 HIPK3Q9H422 1215 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 SCN10AQ9Y5Y9 1956 aa22.97■■□□□ 1.27
SHROOM1-204ENST00000440118 OPLAHO14841 1288 aa22.96■■□□□ 1.27
SHROOM1-204ENST00000440118 EIF3JO75822 258 aaKnown RBP22.96■■□□□ 1.27
SHROOM1-204ENST00000440118 ARIH2O95376 493 aa22.96■■□□□ 1.27
SHROOM1-204ENST00000440118 RXRAP19793 462 aa22.96■■□□□ 1.27
SHROOM1-204ENST00000440118 SLC35G1Q2M3R5 365 aa22.96■■□□□ 1.27
SHROOM1-204ENST00000440118 SYNE3Q6ZMZ3 975 aa22.96■■□□□ 1.27
SHROOM1-204ENST00000440118 B4GALT4O60513 344 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 CD4P01730 458 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 EPHB4P54760 987 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 LY6KQ17RY6 165 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 ZNF697Q5TEC3 545 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 MICU3Q86XE3 530 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 RAB11FIP4Q86YS3 637 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 SLC43A3Q8NBI5 491 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 SPZ1Q9BXG8 430 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 TRPV6Q9H1D0 765 aa22.95■■□□□ 1.26
SHROOM1-204ENST00000440118 GRIN2DO15399 1336 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 A6NJR5 290 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 CCND2P30279 289 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 CYP2C18P33260 490 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 LIFRP42702 1097 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 GHRHRQ02643 423 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 AFG1LQ8WV93 481 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 CUL5Q93034 780 aa22.94■■□□□ 1.26
SHROOM1-204ENST00000440118 NEK1Q96PY6 1258 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms