RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MARCH6O60337 910 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 ZNF75DP51815 510 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 PLA2G4DQ86XP0 818 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 SMYD4Q8IYR2 804 aaPredicted RBP23.79■■□□□ 1.4
PTPRF-207ENST00000436724 TRIML1Q8N9V2 468 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 DCPSQ96C86 337 aaKnown RBP23.79■■□□□ 1.4
PTPRF-207ENST00000436724 NUDT12Q9BQG2 462 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 CCPG1Q9ULG6 757 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 FAM86B1E9PN63 330 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 USP2O75604 605 aaPredicted RBP23.79■■□□□ 1.4
PTPRF-207ENST00000436724 FAM86B2P0C5J1 330 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 HMGCS2P54868 508 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 TRAF1Q13077 416 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 PRR16Q569H4 304 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 GSDMAQ96QA5 445 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 HSD3B7Q9H2F3 369 aa23.79■■□□□ 1.4
PTPRF-207ENST00000436724 MRPL11Q9Y3B7 192 aaKnown RBP23.79■■□□□ 1.4
PTPRF-207ENST00000436724 CYP3A7-CYP3A51PA0A087WV96 503 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 GCOM1H8Y6P7 765 aaPredicted RBP23.78■■□□□ 1.4
PTPRF-207ENST00000436724 GTPBP6O43824 516 aaPredicted RBP23.78■■□□□ 1.4
PTPRF-207ENST00000436724 ICAM1P05362 532 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 POLR2MP0CAP2 368 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 CYP3A7P24462 503 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 USP14P54578 494 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 CYP2W1Q8TAV3 490 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 AS3MTQ9HBK9 375 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 PCDHA12Q9UN75 941 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 FMR1Q06787 632 aaKnown RBP eCLIP23.78■■□□□ 1.4
PTPRF-207ENST00000436724 MCTP2Q6DN12 878 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 SULF1Q8IWU6 871 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 MLKLQ8NB16 471 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.78■■□□□ 1.4
PTPRF-207ENST00000436724 WNK4Q96J92 1243 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 MBOAT7Q96N66 472 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 RAVER2Q9HCJ3 691 aaKnown RBP23.78■■□□□ 1.4
PTPRF-207ENST00000436724 KCNMB3Q9NPA1 279 aa23.78■■□□□ 1.4
PTPRF-207ENST00000436724 PHIPQ8WWQ0 1821 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 IKBKBO14920 756 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 UBXN2AP68543 259 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 PDIA5Q14554 519 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 GPR162Q16538 588 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 DPY19L2Q6NUT2 758 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 SARM1Q6SZW1 724 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 LENG9Q96B70 501 aa23.77■■□□□ 1.4
PTPRF-207ENST00000436724 NAP1L4Q99733 375 aaKnown RBP23.77■■□□□ 1.4
PTPRF-207ENST00000436724 ABCB11O95342 1321 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 CD44P16070 742 aaKnown RBP23.76■■□□□ 1.39
PTPRF-207ENST00000436724 MYL5Q02045 173 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 GRB10Q13322 594 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 TRMT44Q8IYL2 757 aaKnown RBP23.76■■□□□ 1.39
PTPRF-207ENST00000436724 SLC38A10Q9HBR0 1119 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 KBTBD4Q9NVX7 518 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 PPP1R9AQ9ULJ8 1098 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 SMTNL1A8MU46 457 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 NFIBO00712 420 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 MOXD1Q6UVY6 613 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 SNX29Q8TEQ0 813 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 MED15Q96RN5 788 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 RAB34Q9BZG1 259 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 HOMER2Q9NSB8 354 aa23.76■■□□□ 1.39
PTPRF-207ENST00000436724 ATP1A3P13637 1013 aa23.75■■□□□ 1.39
PTPRF-207ENST00000436724 DHX8Q14562 1220 aaKnown RBP23.75■■□□□ 1.39
PTPRF-207ENST00000436724 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.75■■□□□ 1.39
PTPRF-207ENST00000436724 KRT26Q7Z3Y9 468 aa23.75■■□□□ 1.39
PTPRF-207ENST00000436724 CALML4Q96GE6 196 aa23.75■■□□□ 1.39
PTPRF-207ENST00000436724 ZFP91Q96JP5 570 aaPredicted RBP23.75■■□□□ 1.39
PTPRF-207ENST00000436724 PNMA5Q96PV4 448 aa23.75■■□□□ 1.39
PTPRF-207ENST00000436724 RPN1P04843 607 aaKnown RBP23.75■■□□□ 1.39
PTPRF-207ENST00000436724 ETNPPLQ8TBG4 499 aa23.75■■□□□ 1.39
PTPRF-207ENST00000436724 ATG4CQ96DT6 458 aa23.75■■□□□ 1.39
PTPRF-207ENST00000436724 ALAS1P13196 640 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 VGLL4Q14135 290 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 ECM1Q16610 540 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 HSP90AA4PQ58FG1 418 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 KLHL10Q6JEL2 608 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 FANCLQ9NW38 375 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 STAT3P40763 770 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 Q4G0T1 1027 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 NOL9Q5SY16 702 aaKnown RBP23.74■■□□□ 1.39
PTPRF-207ENST00000436724 KRT79Q5XKE5 535 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 CNKSR2Q8WXI2 1034 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 CLEC4DQ8WXI8 215 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 SNCAIPQ9Y6H5 919 aa23.74■■□□□ 1.39
PTPRF-207ENST00000436724 CIITAP33076 1130 aa23.73■■□□□ 1.39
PTPRF-207ENST00000436724 ZNF76P36508 570 aa23.73■■□□□ 1.39
PTPRF-207ENST00000436724 MUM1L1Q5H9M0 696 aa23.73■■□□□ 1.39
PTPRF-207ENST00000436724 BLOC1S4Q9NUP1 217 aa23.73■■□□□ 1.39
PTPRF-207ENST00000436724 AFG3L2Q9Y4W6 797 aa23.73■■□□□ 1.39
PTPRF-207ENST00000436724 PARP14Q460N5 1801 aa23.73■■□□□ 1.39
PTPRF-207ENST00000436724 CYP3A4P08684 503 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 EPHX2P34913 555 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 KCNK18Q7Z418 384 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 DRC7Q8IY82 874 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 CDK5RAP3Q96JB5 506 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 L3MBTL3Q96JM7 780 aaPredicted RBP23.72■■□□□ 1.39
PTPRF-207ENST00000436724 CUEDC2Q9H467 287 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 COL20A1Q9P218 1284 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 NRBP1Q9UHY1 535 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 DACH1Q9UI36 760 aa23.72■■□□□ 1.39
PTPRF-207ENST00000436724 VWA5AO00534 786 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms