RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TRIP12Q14669 1992 aaPredicted RBP16.97■□□□□ 0.31
SDC1-204ENST00000429035 B4DLN1 442 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 NKRFO15226 690 aaKnown RBP eCLIP16.97■□□□□ 0.314e-6■■□□□ 11.7
SDC1-204ENST00000429035 TXNP10599 105 aaKnown RBP16.97■□□□□ 0.31
SDC1-204ENST00000429035 MRPL12P52815 198 aaKnown RBP16.97■□□□□ 0.31
SDC1-204ENST00000429035 CCDC178Q5BJE1 867 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 RASIP1Q5U651 963 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 DEFB128Q7Z7B8 93 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 DGKHQ86XP1 1220 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 DNERQ8NFT8 737 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 UBAC1Q9BSL1 405 aa16.97■□□□□ 0.31
SDC1-204ENST00000429035 ABCB11O95342 1321 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 PRUNE2Q8WUY3 3088 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 MYH7BA7E2Y1 1941 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 RBM47A0AV96 593 aaKnown RBP16.96■□□□□ 0.31
SDC1-204ENST00000429035 ARIH2O95376 493 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 SUPT20HL2P0C7V6 817 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 IGFBP4P22692 258 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 RABGGTBP53611 331 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 TTLL4Q14679 1199 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 NBPF20Q3BBV1 942 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 ASPRV1Q53RT3 343 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 SEPT14Q6ZU15 432 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 RPUSD2Q8IZ73 545 aaKnown RBP16.96■□□□□ 0.31
SDC1-204ENST00000429035 ADGRF4Q8IZF3 695 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 ZSCAN10Q96SZ4 725 aaPredicted RBP16.96■□□□□ 0.31
SDC1-204ENST00000429035 OSBPL3Q9H4L5 887 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 VAT1LQ9HCJ6 419 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 NOD1Q9Y239 953 aa16.96■□□□□ 0.31
SDC1-204ENST00000429035 PARP1P09874 1014 aaKnown RBP16.95■□□□□ 0.3
SDC1-204ENST00000429035 EDNRBP24530 442 aa16.95■□□□□ 0.3
SDC1-204ENST00000429035 QRICH1Q2TAL8 776 aa16.95■□□□□ 0.3
SDC1-204ENST00000429035 CHST3Q7LGC8 479 aa16.95■□□□□ 0.3
SDC1-204ENST00000429035 ENAHQ8N8S7 591 aaPredicted RBP16.95■□□□□ 0.3
SDC1-204ENST00000429035 DSCC1Q9BVC3 393 aa16.95■□□□□ 0.3
SDC1-204ENST00000429035 SLC28A3Q9HAS3 691 aa16.95■□□□□ 0.3
SDC1-204ENST00000429035 YBX2Q9Y2T7 364 aaKnown RBP16.95■□□□□ 0.3
SDC1-204ENST00000429035 SLC4A7Q9Y6M7 1214 aa16.95■□□□□ 0.3
SDC1-204ENST00000429035 IFIT1BQ5T764 474 aaKnown RBP16.94■□□□□ 0.3
SDC1-204ENST00000429035 PPP2R2DQ66LE6 453 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 FBXO11Q86XK2 927 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 MICALL1Q8N3F8 863 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 TBC1D5Q92609 795 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 TAAR1Q96RJ0 339 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 KRT23Q9C075 422 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 PRDM6Q9NQX0 595 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 CTNNA3Q9UI47 895 aa16.94■□□□□ 0.3
SDC1-204ENST00000429035 EIF2AK2P19525 551 aaKnown RBP16.93■□□□□ 0.3
SDC1-204ENST00000429035 NT5C2P49902 561 aa16.93■□□□□ 0.3
SDC1-204ENST00000429035 CCDC85BQ15834 202 aaPredicted RBP16.93■□□□□ 0.3
SDC1-204ENST00000429035 ARHGEF16Q5VV41 709 aa16.93■□□□□ 0.3
SDC1-204ENST00000429035 MCF2L2Q86YR7 1114 aa16.93■□□□□ 0.3
SDC1-204ENST00000429035 SYTL5Q8TDW5 730 aaPredicted RBP16.93■□□□□ 0.3
SDC1-204ENST00000429035 CNNM2Q9H8M5 875 aa16.93■□□□□ 0.3
SDC1-204ENST00000429035 ZSWIM5Q9P217 1185 aa16.93■□□□□ 0.3
SDC1-204ENST00000429035 COL20A1Q9P218 1284 aa16.93■□□□□ 0.3
SDC1-204ENST00000429035 MRPL11Q9Y3B7 192 aaKnown RBP16.93■□□□□ 0.3
SDC1-204ENST00000429035 BAZ2BQ9UIF8 2168 aaKnown RBP16.92■□□□□ 0.3
SDC1-204ENST00000429035 KPNA6O60684 536 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 CFBP00751 764 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 GH1P01241 217 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 PFKMP08237 780 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 MYOGP15173 224 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 ATP2A2P16615 1042 aaKnown RBP16.92■□□□□ 0.3
SDC1-204ENST00000429035 LY6KQ17RY6 165 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 RETREG2Q8NC44 543 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 TET1Q8NFU7 2136 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 NSUN6Q8TEA1 469 aaKnown RBP16.92■□□□□ 0.3
SDC1-204ENST00000429035 AFG1LQ8WV93 481 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 RMDN3Q96TC7 470 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 FTOQ9C0B1 505 aaKnown RBP eCLIP16.92■□□□□ 0.3
SDC1-204ENST00000429035 IL25Q9H293 177 aa16.92■□□□□ 0.3
SDC1-204ENST00000429035 VCANP13611 3396 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 MMP3P08254 477 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 ACTN1P12814 892 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 STXBP2Q15833 593 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 NFRKBQ6P4R8 1299 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 HOMER1Q86YM7 354 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 STAG2Q8N3U4 1231 aa16.91■□□□□ 0.3
SDC1-204ENST00000429035 A6NJR5 290 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 SORBS3O60504 671 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 TRDNQ13061 729 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 BFSP2Q13515 415 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 ADGRE1Q14246 886 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 TJAP1Q5JTD0 557 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 RGS22Q8NE09 1264 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 ANKS1AQ92625 1134 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 SYMPKQ92797 1274 aaKnown RBP16.9■□□□□ 0.3
SDC1-204ENST00000429035 JMJD4Q9H9V9 463 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 THEGQ9P2T0 379 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 MRVI1Q9Y6F6 885 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 PTPRSQ13332 1948 aa16.9■□□□□ 0.3
SDC1-204ENST00000429035 MYCLP12524 364 aaPredicted RBP16.89■□□□□ 0.29
SDC1-204ENST00000429035 ARHGAP1Q07960 439 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 PTGISQ16647 500 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 CYB5R4Q7L1T6 521 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 CCDC155Q8N6L0 562 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 ALG1Q9BT22 464 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 AMNQ9BXJ7 453 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 PXMP2Q9NR77 195 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms