RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SH3RF3Q8TEJ3 882 aaPredicted RBP10.83□□□□□ -0.68
USP54-205ENST00000424265 PPP2R3BQ9Y5P8 575 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 ATP2C2O75185 946 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 E2F6O75461 281 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 PNMA8AQ86V59 439 aaPredicted RBP10.83□□□□□ -0.68
USP54-205ENST00000424265 LMNTD2Q8IXW0 634 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 CXorf38Q8TB03 319 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 FAM81BQ96LP2 452 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 TCEANC2Q96MN5 208 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 DACH1Q9UI36 760 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 TADA3O75528 432 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 PRDM1O75626 825 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 FERP16591 822 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 ZFXP17010 805 aaPredicted RBP10.83□□□□□ -0.68
USP54-205ENST00000424265 NAT1P18440 290 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 HEATR3Q7Z4Q2 680 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 CCDC144CPQ8IYA2 1237 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 CEP57L1Q8IYX8 460 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 STK24Q9Y6E0 443 aa10.83□□□□□ -0.68
USP54-205ENST00000424265 Q4G0T1 1027 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 KCNV1Q6PIU1 500 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 PNMA1Q8ND90 353 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 DDX12PQ92771 950 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 FUT8Q9BYC5 575 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 HACL1Q9UJ83 578 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 RHOXF2BP0C7M4 288 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 NECAB1Q8N987 351 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 KCNG4Q8TDN1 519 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 FAM163AQ96GL9 167 aaPredicted RBP10.82□□□□□ -0.68
USP54-205ENST00000424265 RHOXF2Q9BQY4 288 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 VAT1LQ9HCJ6 419 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 CCDC82Q8N4S0 544 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 TRIM11Q96F44 468 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 ZDHHC15Q96MV8 337 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 LRRC27Q9C0I9 530 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 RGS17Q9UGC6 210 aaPredicted RBP10.82□□□□□ -0.68
USP54-205ENST00000424265 PAPPAQ13219 1627 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 SIPA1L3O60292 1781 aaPredicted RBP10.82□□□□□ -0.68
USP54-205ENST00000424265 CLRN2A0PK11 232 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 DYTNA2CJ06 578 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 ATP6V1G1O75348 118 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 CDK8P49336 464 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 PPFIA1Q13136 1202 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 SH2D4BQ5SQS7 431 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 PDILTQ8N807 584 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 DPF2Q92785 391 aa10.82□□□□□ -0.68
USP54-205ENST00000424265 PUF60Q9UHX1 559 aaKnown RBP10.82□□□□□ -0.68
USP54-205ENST00000424265 GSG1L2A8MUP6 293 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 PSMD14O00487 310 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 GNAT1P11488 350 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 OLFM4Q6UX06 510 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 CCDC170Q8IYT3 715 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 EPC1Q9H2F5 836 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP54-205ENST00000424265 SPDYE3A6NKU9 549 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 OPA1O60313 960 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 CEBPZQ03701 1054 aaKnown RBP10.81□□□□□ -0.68
USP54-205ENST00000424265 PLA2G4DQ86XP0 818 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 KCNV2Q8TDN2 545 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 FAM151AQ8WW52 585 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 ZDHHC9Q9Y397 364 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 WNK3Q9BYP7 1800 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 CHST3Q7LGC8 479 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 FANCBQ8NB91 859 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 ZKSCAN3Q9BRR0 538 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 CNOT7Q9UIV1 285 aaKnown RBP10.81□□□□□ -0.68
USP54-205ENST00000424265 PRKAB2O43741 272 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 ZEB2O60315 1214 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 POLE2P56282 527 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 TMED1Q13445 227 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 TBC1D25Q3MII6 688 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 FKBP1CQ5VVH2 108 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 CWF19L1Q69YN2 538 aaKnown RBP10.81□□□□□ -0.68
USP54-205ENST00000424265 OTUD7BQ6GQQ9 843 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 ZNF365Q70YC5 407 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 TMEM110Q86TL2 294 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 FAM160B2Q86V87 743 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 MICALL2Q8IY33 904 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 PHC3Q8NDX5 983 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 ATRIPQ8WXE1 791 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 RTFDC1Q9BY42 306 aaPredicted RBP10.81□□□□□ -0.68
USP54-205ENST00000424265 ACTR5Q9H9F9 607 aaPredicted RBP10.81□□□□□ -0.68
USP54-205ENST00000424265 LMCD1Q9NZU5 365 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 STX1AQ16623 288 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 ERMNQ8TAM6 284 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 OSBPL5Q9H0X9 879 aaPredicted RBP10.81□□□□□ -0.68
USP54-205ENST00000424265 TCP11L1Q9NUJ3 509 aa10.81□□□□□ -0.68
USP54-205ENST00000424265 UBR2Q8IWV8 1755 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 DUOX1Q9NRD9 1551 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 SH2B2O14492 632 aaPredicted RBP10.8□□□□□ -0.68
USP54-205ENST00000424265 FDX1P10109 184 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 TRIM21P19474 475 aaKnown RBP10.8□□□□□ -0.68
USP54-205ENST00000424265 C12orf60Q5U649 245 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 INHBEP58166 350 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 RILPL1Q5EBL4 403 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 KANK3Q6NY19 840 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 KRT25Q7Z3Z0 450 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 SMCR8Q8TEV9 937 aaPredicted RBP10.8□□□□□ -0.68
USP54-205ENST00000424265 DCAF4Q8WV16 495 aa10.8□□□□□ -0.68
USP54-205ENST00000424265 CTAGE15A4D2H0 777 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms