RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 GPNMBQ14956 572 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 PPP2R5BQ15173 497 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 SKIV2LQ15477 1246 aaKnown RBP9.53□□□□□ -0.88
VIM-202ENST00000421459 TCTN1Q2MV58 587 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 TMEM67Q5HYA8 995 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 CHST3Q7LGC8 479 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 TAAR1Q96RJ0 339 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 FTOQ9C0B1 505 aaKnown RBP eCLIP9.53□□□□□ -0.88
VIM-202ENST00000421459 COL20A1Q9P218 1284 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 MTCH2Q9Y6C9 303 aa9.53□□□□□ -0.88
VIM-202ENST00000421459 A6NJR5 290 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 TRIM6-TRIM34B2RNG4 842 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 SORBS3O60504 671 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 SUPT20HL2P0C7V6 817 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 SNHG28P0DPA3 235 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 BMP1P13497 986 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 TAP1Q03518 808 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 GDF6Q6KF10 455 aaPredicted RBP9.52□□□□□ -0.89
VIM-202ENST00000421459 MFSD6Q6ZSS7 791 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 SEPT14Q6ZU15 432 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 AFG1LQ8WV93 481 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 ARNTL2Q8WYA1 636 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 RILPL2Q969X0 211 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 CTAGE1Q96RT6 745 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 LNPKQ9C0E8 428 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 TRANK1O15050 2925 aa9.52□□□□□ -0.89
VIM-202ENST00000421459 LCHNA4D1U4 455 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 RRP1P56182 461 aaKnown RBP9.51□□□□□ -0.89
VIM-202ENST00000421459 B4GALNT3Q6L9W6 998 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 CCDC62Q6P9F0 684 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 HERC6Q8IVU3 1022 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 ADGRF4Q8IZF3 695 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 RETREG2Q8NC44 543 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 SCFD2Q8WU76 684 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 DHX38Q92620 1227 aaKnown RBP9.51□□□□□ -0.89
VIM-202ENST00000421459 KAT2BQ92831 832 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 ZFP91Q96JP5 570 aaPredicted RBP9.51□□□□□ -0.89
VIM-202ENST00000421459 SEZ6LQ9BYH1 1024 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 VAT1LQ9HCJ6 419 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 ZBTB47Q9UFB7 747 aaPredicted RBP9.51□□□□□ -0.89
VIM-202ENST00000421459 CCDC171Q6TFL3 1326 aa9.51□□□□□ -0.89
VIM-202ENST00000421459 NKRFO15226 690 aaKnown RBP eCLIP9.5□□□□□ -0.89
VIM-202ENST00000421459 KDM4AO75164 1064 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 SDSP20132 328 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 DEFB103AP81534 67 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 ZNF200P98182 395 aaPredicted RBP9.5□□□□□ -0.89
VIM-202ENST00000421459 ARHGAP1Q07960 439 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 HIC1Q14526 733 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 CDC37Q16543 378 aaPredicted RBP9.5□□□□□ -0.89
VIM-202ENST00000421459 PTGISQ16647 500 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 NFRKBQ6P4R8 1299 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 IL27Q8NEV9 243 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 DNERQ8NFT8 737 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 SYTL5Q8TDW5 730 aaPredicted RBP9.5□□□□□ -0.89
VIM-202ENST00000421459 WNT8BQ93098 351 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 TTC14Q96N46 770 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 NOD1Q9Y239 953 aa9.5□□□□□ -0.89
VIM-202ENST00000421459 GBF1Q92538 1859 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 LOC102724159A0A0B4J2E5 919 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 B4E1Z4 1266 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 LPXNO60711 386 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 PFKMP08237 780 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 MMP3P08254 477 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 ACTN1P12814 892 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 EIF2AK2P19525 551 aaKnown RBP9.49□□□□□ -0.89
VIM-202ENST00000421459 GRB10Q13322 594 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 PWP2Q15269 919 aaKnown RBP9.49□□□□□ -0.89
VIM-202ENST00000421459 QRICH1Q2TAL8 776 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 BRDTQ58F21 947 aaPredicted RBP9.49□□□□□ -0.89
VIM-202ENST00000421459 FAM117BQ6P1L5 589 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 CWC27Q6UX04 472 aaKnown RBP9.49□□□□□ -0.89
VIM-202ENST00000421459 PNMA1Q8ND90 353 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 ALG1Q9BT22 464 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 JMJD4Q9H9V9 463 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 HDAC6Q9UBN7 1215 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 MTUS1Q9ULD2 1270 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 WDR19Q8NEZ3 1342 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 RAD50Q92878 1312 aa9.49□□□□□ -0.89
VIM-202ENST00000421459 TTC28Q96AY4 2481 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 SCN5AQ14524 2016 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 PITPNM1O00562 1244 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 ZNF213O14771 459 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 OPLAHO14841 1288 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 TLL1O43897 1013 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 KPNA6O60684 536 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 NBNO60934 754 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 GH1P01241 217 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 IGHDP01880 384 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 ZNF286BP0CG31 522 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 CKBP12277 381 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 RFC2P35250 354 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 WDR5P61964 334 aaKnown RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 PTPN11Q06124 597 aaPredicted RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 BFSP2Q13515 415 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 HDAC1Q13547 482 aaPredicted RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 GPATCH4Q5T3I0 446 aaKnown RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 DGKHQ86XP1 1220 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 PLEKHM2Q8IWE5 1019 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 STAG2Q8N3U4 1231 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 RGS22Q8NE09 1264 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms