RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 MYH6P13533 1939 aa26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 PIK3CDO00329 1044 aa26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 ST18O60284 1047 aa26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 AKR1A1P14550 325 aa26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 EN2P19622 333 aaPredicted RBP26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 CCDC12Q8WUD4 166 aaPredicted RBP26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 CRISPLD2Q9H0B8 497 aa26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 COL20A1Q9P218 1284 aa26.57■■□□□ 1.84
SMARCB1-205ENST00000417137 PLXNA1Q9UIW2 1896 aa26.56■■□□□ 1.84
SMARCB1-205ENST00000417137 ME3Q16798 604 aa26.56■■□□□ 1.84
SMARCB1-205ENST00000417137 FCHSD1Q86WN1 690 aa26.56■■□□□ 1.84
SMARCB1-205ENST00000417137 ZSCAN31Q96LW9 406 aaPredicted RBP26.56■■□□□ 1.84
SMARCB1-205ENST00000417137 VTA1Q9NP79 307 aa26.56■■□□□ 1.84
SMARCB1-205ENST00000417137 STXBP3O00186 592 aa26.55■■□□□ 1.84
SMARCB1-205ENST00000417137 EDNRBP24530 442 aa26.55■■□□□ 1.84
SMARCB1-205ENST00000417137 LHX8Q68G74 356 aa26.55■■□□□ 1.84
SMARCB1-205ENST00000417137 PXMP2Q9NR77 195 aa26.55■■□□□ 1.84
SMARCB1-205ENST00000417137 SMCO2A6NFE2 343 aa26.54■■□□□ 1.84
SMARCB1-205ENST00000417137 DEXIO95424 95 aa26.54■■□□□ 1.84
SMARCB1-205ENST00000417137 RARBP10826 455 aa26.54■■□□□ 1.84
SMARCB1-205ENST00000417137 STXBP2Q15833 593 aa26.54■■□□□ 1.84
SMARCB1-205ENST00000417137 PKN1Q16512 942 aa26.54■■□□□ 1.84
SMARCB1-205ENST00000417137 OGDHLQ9ULD0 1010 aa26.54■■□□□ 1.84
SMARCB1-205ENST00000417137 MEIS2O14770 477 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 EIF2AK2P19525 551 aaKnown RBP26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 ADCY7P51828 1080 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 CCDC144BQ3MJ40 725 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 IQSEC1Q6DN90 963 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 USP17L6PQ6QN14 398 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 EEPD1Q7L9B9 569 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 ANKLE1Q8NAG6 615 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 GTF3C6Q969F1 213 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 KATNBL1Q9H079 304 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 RIC8AQ9NPQ8 531 aa26.53■■□□□ 1.84
SMARCB1-205ENST00000417137 PPFIA3O75145 1194 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 NR3C2P08235 984 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 NECAB1Q8N987 351 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 ARRDC4Q8NCT1 418 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 CCDC148Q8NFR7 591 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 C6orf50Q9HD87 102 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 SH3GLB2Q9NR46 395 aa26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 SH2B1Q9NRF2 756 aaPredicted RBP26.52■■□□□ 1.84
SMARCB1-205ENST00000417137 SPDYE3A6NKU9 549 aa26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 EIF3JO75822 258 aaKnown RBP26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 GNA11P29992 359 aa26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 TYW1BQ6NUM6 668 aa26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 FBXO16Q8IX29 292 aaPredicted RBP26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 PDCD2LQ9BRP1 358 aa26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 EHMT1Q9H9B1 1298 aa26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 DDX49Q9Y6V7 483 aaKnown RBP26.51■■□□□ 1.83
SMARCB1-205ENST00000417137 ESYT2A0FGR8 921 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 LARGE1O95461 756 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 TNFAIP2Q03169 654 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 PGM5Q15124 567 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 TAPT1Q6NXT6 567 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 FAM177A1Q8N128 213 aaPredicted RBP26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 WASF1Q92558 559 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 SHISA4Q96DD7 197 aa26.5■■□□□ 1.83
SMARCB1-205ENST00000417137 STK36Q9NRP7 1315 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 DUSP11O75319 330 aaKnown RBP26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 FOSP01100 380 aaPredicted RBP26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 MYCLP12524 364 aaPredicted RBP26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 CCND2P30279 289 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 MCM2P49736 904 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 ANO1Q5XXA6 986 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 MCTP2Q6DN12 878 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 VSIG10LQ86VR7 867 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 BICD2Q8TD16 824 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 ZMYND12Q9H0C1 365 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 SPC25Q9HBM1 224 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 XPNPEP3Q9NQH7 507 aa26.49■■□□□ 1.83
SMARCB1-205ENST00000417137 RBM47A0AV96 593 aaKnown RBP26.48■■□□□ 1.83
SMARCB1-205ENST00000417137 XBP1P17861 261 aa26.48■■□□□ 1.83
SMARCB1-205ENST00000417137 UBE2SQ16763 222 aa26.48■■□□□ 1.83
SMARCB1-205ENST00000417137 XRRA1Q6P2D8 792 aa26.48■■□□□ 1.83
SMARCB1-205ENST00000417137 SCFD2Q8WU76 684 aa26.48■■□□□ 1.83
SMARCB1-205ENST00000417137 PDGFCQ9NRA1 345 aa26.48■■□□□ 1.83
SMARCB1-205ENST00000417137 KIAA0100Q14667 2235 aaKnown RBP26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 STAM2O75886 525 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 FARP2O94887 1054 aaPredicted RBP26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 ADCYAP1R1P41586 468 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 RNF180Q86T96 592 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 WDR11Q9BZH6 1224 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 VPS54Q9P1Q0 977 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 ORC3Q9UBD5 711 aaPredicted RBP26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 PCDHA6Q9UN73 950 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 PCDHA8Q9Y5H6 950 aa26.47■■□□□ 1.83
SMARCB1-205ENST00000417137 RBBP6Q7Z6E9 1792 aaKnown RBP26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 FRMPD4Q14CM0 1322 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 CTDNEP1O95476 244 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 NLRP5P59047 1200 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 AP3B2Q13367 1082 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 TTLL4Q14679 1199 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 Q9Y3F1 56 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 CENPFP49454 3210 aa26.46■■□□□ 1.83
SMARCB1-205ENST00000417137 NKRFO15226 690 aaKnown RBP eCLIP26.45■■□□□ 1.82
SMARCB1-205ENST00000417137 MYCNP04198 464 aaPredicted RBP26.45■■□□□ 1.82
SMARCB1-205ENST00000417137 DUSP28Q4G0W2 176 aa26.45■■□□□ 1.82
SMARCB1-205ENST00000417137 SEPT14Q6ZU15 432 aa26.45■■□□□ 1.82
SMARCB1-205ENST00000417137 LLPHQ9BRT6 129 aaKnown RBP26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms