RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 HSPA6P17066 643 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 MAPK4P31152 587 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 CIITAP33076 1130 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 ARHGAP4P98171 946 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 PTPAQ15257 358 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 SF3A1Q15459 793 aaKnown RBP16.23■□□□□ 0.19
SF3B1-204ENST00000414963 XRRA1Q6P2D8 792 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 ANKRD35Q8N283 1001 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 LINC00301Q8NCQ3 95 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 LEO1Q8WVC0 666 aaPredicted RBP16.23■□□□□ 0.19
SF3B1-204ENST00000414963 PGBD1Q96JS3 809 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 MBOAT7Q96N66 472 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 TAAR1Q96RJ0 339 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 CPA4Q9UI42 421 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 CEP131Q9UPN4 1083 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 ELP1O95163 1332 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 NCLP19338 710 aaKnown RBP16.22■□□□□ 0.19
SF3B1-204ENST00000414963 C1QTNF8P60827 252 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 HTRA3P83110 453 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 NBR1Q14596 966 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 KCTD2Q14681 263 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 CSPP1Q1MSJ5 1256 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 C4orf32Q8N8J7 132 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 FAM133AQ8N9E0 248 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 DNERQ8NFT8 737 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 NSUN6Q8TEA1 469 aaKnown RBP16.22■□□□□ 0.19
SF3B1-204ENST00000414963 RMDN3Q96TC7 470 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 MMP19Q99542 508 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 FTOQ9C0B1 505 aaKnown RBP eCLIP16.22■□□□□ 0.19
SF3B1-204ENST00000414963 EFCC1Q9HA90 598 aa16.22■□□□□ 0.19
SF3B1-204ENST00000414963 ATP2B1P20020 1258 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 MCM4P33991 863 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 ZNF174Q15697 407 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 LETM2Q2VYF4 491 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 PCNX4Q63HM2 1172 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 KCNG4Q8TDN1 519 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 SPATA32Q96LK8 384 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 IWS1Q96ST2 819 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 PXMP2Q9NR77 195 aa16.21■□□□□ 0.19
SF3B1-204ENST00000414963 THSD7BQ9C0I4 1608 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 LOC102724159A0A0B4J2E5 919 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 GOLGA6L22H0YM25 854 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 POTEB2H3BUK9 544 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 LAD1O00515 517 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 SPTLC2O15270 562 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 CCNT1O60563 726 aaKnown RBP16.2■□□□□ 0.18
SF3B1-204ENST00000414963 PPP6R2O75170 966 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 PTPREP23469 700 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 MCM7P33993 719 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 ATP2C1P98194 919 aaPredicted RBP16.2■□□□□ 0.18
SF3B1-204ENST00000414963 CEBPZQ03701 1054 aaKnown RBP16.2■□□□□ 0.18
SF3B1-204ENST00000414963 STK38Q15208 465 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 PWP2Q15269 919 aaKnown RBP16.2■□□□□ 0.18
SF3B1-204ENST00000414963 Q4G0T1 1027 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 ARHGEF16Q5VV41 709 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 PLEKHH3Q7Z736 793 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 VSIG10LQ86VR7 867 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 CCAR1Q8IX12 1150 aaKnown RBP16.2■□□□□ 0.18
SF3B1-204ENST00000414963 PDCD2LQ9BRP1 358 aa16.2■□□□□ 0.18
SF3B1-204ENST00000414963 RBBP6Q7Z6E9 1792 aaKnown RBP16.2■□□□□ 0.18
SF3B1-204ENST00000414963 SLC15A5A6NIM6 579 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 FIBPO43427 364 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 CNTN2Q02246 1040 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 PTGDRQ13258 359 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 GRB14Q14449 540 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 PGM5Q15124 567 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 ARL6IP4Q66PJ3 421 aaKnown RBP16.19■□□□□ 0.18
SF3B1-204ENST00000414963 NIPA1Q7RTP0 329 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 GPR142Q7Z601 462 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 JMYQ8N9B5 988 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 PURBQ96QR8 312 aaKnown RBP16.19■□□□□ 0.18
SF3B1-204ENST00000414963 RNF186Q9NXI6 227 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 ADD3Q9UEY8 706 aaKnown RBP16.19■□□□□ 0.18
SF3B1-204ENST00000414963 MYH15Q9Y2K3 1946 aa16.19■□□□□ 0.18
SF3B1-204ENST00000414963 SOWAHBA6NEL2 793 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 FAM86B1E9PN63 330 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 MEIS1O00470 390 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 STAM2O75886 525 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 TDP2O95551 362 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 NR3C2P08235 984 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 FAM86B2P0C5J1 330 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 EDNRBP24530 442 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 PRPHP41219 470 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 ZNF792Q3KQV3 632 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 CEP55Q53EZ4 464 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 WDR78Q5VTH9 848 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 LENG9Q96B70 501 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 MTMR9Q96QG7 549 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 GDPD2Q9HCC8 539 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 DDX25Q9UHL0 483 aaKnown RBP16.18■□□□□ 0.18
SF3B1-204ENST00000414963 DIS3Q9Y2L1 958 aaKnown RBP16.18■□□□□ 0.18
SF3B1-204ENST00000414963 SRPRBQ9Y5M8 271 aaKnown RBP16.18■□□□□ 0.18
SF3B1-204ENST00000414963 UBIAD1Q9Y5Z9 338 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 IVNS1ABPQ9Y6Y0 642 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 ASTN1O14525 1302 aa16.18■□□□□ 0.18
SF3B1-204ENST00000414963 IGLV3-22A0A075B6J6 115 aa16.17■□□□□ 0.18
SF3B1-204ENST00000414963 DDX11L8A8MPP1 907 aa16.17■□□□□ 0.18
SF3B1-204ENST00000414963 B4DLN1 442 aa16.17■□□□□ 0.18
SF3B1-204ENST00000414963 TBX3O15119 743 aa16.17■□□□□ 0.18
SF3B1-204ENST00000414963 NEMFO60524 1076 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms