RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CELF1Q92879 486 aaKnown RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 ZNF287Q9HBT7 754 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 DISC1Q9NRI5 854 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 E7EVH7 732 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 KCNK3O14649 394 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 DPYDQ12882 1025 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 ITPK1Q13572 414 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 TUBB2AQ13885 445 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 ZKSCAN8Q15776 578 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC6Q16204 474 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 CNNM4Q6P4Q7 775 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC25Q86WR0 208 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 GJA10Q969M2 543 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 TUBB2BQ9BVA1 445 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 LACRTQ9GZZ8 138 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 ANKZF1Q9H8Y5 726 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 RNF225M0QZC1 329 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 KLHL30Q0D2K2 578 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 CALCRLQ16602 461 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 KIAA0753Q2KHM9 967 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 ADGRA1Q86SQ6 560 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 MARCH10Q8NA82 808 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 ZNF579Q8NAF0 562 aaKnown RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 RDH13Q8NBN7 331 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 RNF217Q8TC41 542 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 P2RX5Q93086 422 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 SELENOSQ9BQE4 189 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 MED4Q9NPJ6 270 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 XRN1Q8IZH2 1706 aaKnown RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 CAND2O75155 1236 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 SKAP2O75563 359 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 KRT13P13646 458 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 EZH2Q15910 746 aaKnown RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 GNPTABQ3T906 1256 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 MAEAQ7L5Y9 396 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 RASGRP2Q7LDG7 609 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 MS4A14Q96JA4 679 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 LSM14BQ9BX40 385 aaKnown RBP13.16□□□□□ -0.3
HMGB1-206ENST00000405805 TMEM60Q9H2L4 133 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 NFU1Q9UMS0 254 aa13.16□□□□□ -0.3
HMGB1-206ENST00000405805 OR52Z1P0C646 297 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 ZNF18P17022 549 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 REXO1Q8N1G1 1221 aaKnown RBP13.15□□□□□ -0.3
HMGB1-206ENST00000405805 TRIM58Q8NG06 486 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 SAAL1Q96ER3 474 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 DPH5Q9H2P9 285 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.15□□□□□ -0.3
HMGB1-206ENST00000405805 RGPD1P0DJD0 1748 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 CLTAP09496 248 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 ABCB4P21439 1286 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 TUBB4BP68371 445 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 TBCKQ8TEA7 893 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 KIFC2Q96AC6 838 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 LRRC1Q9BTT6 524 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 ADAMTS1Q9UHI8 967 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 FANCGO15287 622 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 LONP1P36776 959 aaKnown RBP13.15□□□□□ -0.3
HMGB1-206ENST00000405805 ARHGAP25P42331 645 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 SLC9C1Q4G0N8 1177 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC155Q8N6L0 562 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 SERPINA10Q9UK55 444 aa13.15□□□□□ -0.3
HMGB1-206ENST00000405805 XDHP47989 1333 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 POTEMA6NI47 508 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 GFPT1Q06210 699 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 STK4Q13043 487 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PPP2R5BQ15173 497 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 CCDC170Q8IYT3 715 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 CTNNBL1Q8WYA6 563 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 NUP58Q9BVL2 599 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 EHD4Q9H223 541 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PKD2L1Q9P0L9 805 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 RGPD2P0DJD1 1756 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 SLC16A2P36021 539 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 KIF11P52732 1056 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PMS1P54277 932 aaKnown RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 MXRA7P84157 204 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 IFT88Q13099 833 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 RSRC2Q7L4I2 434 aaKnown RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 RNF168Q8IYW5 571 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 EYA3Q99504 573 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 CDHR2Q9BYE9 1310 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 STK36Q9NRP7 1315 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 LGALS16A8MUM7 142 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PPP1R12AO14974 1030 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 CHMP2AO43633 222 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 HEXIM1O94992 359 aaKnown RBP13.14□□□□□ -0.31
HMGB1-206ENST00000405805 LDHCP07864 332 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PPP1R7Q15435 360 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 CFAP221Q4G0U5 840 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 ARMCX6Q7L4S7 300 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 VPS36Q86VN1 386 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PIGSQ96S52 555 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 L1RE1Q9UN81 338 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 PCDHB13Q9Y5F0 798 aa13.14□□□□□ -0.31
HMGB1-206ENST00000405805 POLE2P56282 527 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 SEMA3FQ13275 785 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 ANKRD40Q6AI12 368 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 DNAAF5Q86Y56 855 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms