RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 XRCC5P13010 732 aaKnown RBP18.27■□□□□ 0.52
HMGA1-204ENST00000401473 RGS2P41220 211 aa18.27■□□□□ 0.52
HMGA1-204ENST00000401473 GALNT17Q6IS24 598 aa18.27■□□□□ 0.52
HMGA1-204ENST00000401473 DAGLBQ8NCG7 672 aa18.27■□□□□ 0.52
HMGA1-204ENST00000401473 DIS3Q9Y2L1 958 aaKnown RBP18.27■□□□□ 0.52
HMGA1-204ENST00000401473 ELNP15502 786 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 SYT1P21579 422 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 IRF5Q13568 498 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 TRIM29Q14134 588 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 EARS2Q5JPH6 523 aaKnown RBP18.26■□□□□ 0.51
HMGA1-204ENST00000401473 REXO1Q8N1G1 1221 aaKnown RBP18.26■□□□□ 0.51
HMGA1-204ENST00000401473 MCOLN1Q9GZU1 580 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 GLT8D2Q9H1C3 349 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 PXMP2Q9NR77 195 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 KIF3AQ9Y496 699 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 ALDH5A1P51649 535 aaPredicted RBP18.26■□□□□ 0.51
HMGA1-204ENST00000401473 PRMT2P55345 433 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 UBXN2AP68543 259 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 DIS3L2Q8IYB7 885 aaKnown RBP18.26■□□□□ 0.51
HMGA1-204ENST00000401473 DNERQ8NFT8 737 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 RAET1EQ8TD07 263 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 BICD2Q8TD16 824 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 TNFRSF25Q93038 417 aa18.26■□□□□ 0.51
HMGA1-204ENST00000401473 MYH7BA7E2Y1 1941 aa18.25■□□□□ 0.51
HMGA1-204ENST00000401473 EDIL3O43854 480 aa18.25■□□□□ 0.51
HMGA1-204ENST00000401473 EIF2AK2P19525 551 aaKnown RBP18.25■□□□□ 0.51
HMGA1-204ENST00000401473 PKN2Q16513 984 aaKnown RBP18.25■□□□□ 0.51
HMGA1-204ENST00000401473 FBXO46Q6PJ61 603 aaPredicted RBP18.25■□□□□ 0.51
HMGA1-204ENST00000401473 NSUN6Q8TEA1 469 aaKnown RBP18.25■□□□□ 0.51
HMGA1-204ENST00000401473 TRIB2Q92519 343 aa18.25■□□□□ 0.51
HMGA1-204ENST00000401473 APBA2Q99767 749 aa18.25■□□□□ 0.51
HMGA1-204ENST00000401473 ADCY3O60266 1144 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 ARHGEF16Q5VV41 709 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 MAMDC4Q6UXC1 1216 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 TEX2Q8IWB9 1127 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 IL31RAQ8NI17 732 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 ZFP91Q96JP5 570 aaPredicted RBP18.24■□□□□ 0.51
HMGA1-204ENST00000401473 PDCD2LQ9BRP1 358 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 SLC5A4Q9NY91 659 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 ADD3Q9UEY8 706 aaKnown RBP18.24■□□□□ 0.51
HMGA1-204ENST00000401473 SPDYE3A6NKU9 549 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 KIF28PB7ZC32 967 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 FOSP01100 380 aaPredicted RBP18.24■□□□□ 0.51
HMGA1-204ENST00000401473 KRT2P35908 639 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 ZNF467Q7Z7K2 595 aaPredicted RBP18.24■□□□□ 0.51
HMGA1-204ENST00000401473 SH3TC2Q8TF17 1288 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 TINF2Q9BSI4 451 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 ANO3Q9BYT9 981 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 RPTORQ8N122 1335 aa18.24■□□□□ 0.51
HMGA1-204ENST00000401473 FAM205CA6NFA0 338 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 H3BQV1 296 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 SNAI1O95863 264 aaPredicted RBP18.23■□□□□ 0.51
HMGA1-204ENST00000401473 NR3C2P08235 984 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 EDNRBP24530 442 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 CYP2C19P33261 490 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 TRIM32Q13049 653 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 AP3B2Q13367 1082 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 PKP1Q13835 747 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 PGM5Q15124 567 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 IFFO2Q5TF58 517 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 CRYGNQ8WXF5 182 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 FRMPD4Q14CM0 1322 aa18.23■□□□□ 0.51
HMGA1-204ENST00000401473 PDCP20941 246 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 U2AF2P26368 475 aaKnown RBP eCLIP18.22■□□□□ 0.51
HMGA1-204ENST00000401473 GRK4P32298 578 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 MRPS9P82933 396 aaKnown RBP18.22■□□□□ 0.51
HMGA1-204ENST00000401473 OLFML2BQ68BL8 750 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 VSIG10LQ86VR7 867 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 MORC4Q8TE76 937 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 PXYLP1Q8TE99 480 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 PRAMEF19Q5SWL8 479 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 PIK3AP1Q6ZUJ8 805 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 ARMCX2Q7L311 632 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 IWS1Q96ST2 819 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 FOXP1Q9H334 677 aaPredicted RBP18.22■□□□□ 0.51
HMGA1-204ENST00000401473 MTMR6Q9Y217 621 aa18.22■□□□□ 0.51
HMGA1-204ENST00000401473 STX6O43752 255 aa18.21■□□□□ 0.51
HMGA1-204ENST00000401473 SREBF1P36956 1147 aa18.21■□□□□ 0.51
HMGA1-204ENST00000401473 SAFBQ15424 915 aaKnown RBP eCLIP18.21■□□□□ 0.51
HMGA1-204ENST00000401473 EEPD1Q7L9B9 569 aa18.21■□□□□ 0.51
HMGA1-204ENST00000401473 TBCKQ8TEA7 893 aa18.21■□□□□ 0.51
HMGA1-204ENST00000401473 VPS37CA5D8V6 355 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-204ENST00000401473 ASB14A6NK59 587 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 RGS20O76081 388 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 MYCLP12524 364 aaPredicted RBP18.2■□□□□ 0.5
HMGA1-204ENST00000401473 ARHGAP4P98171 946 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 INF2Q27J81 1249 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 SLC9C1Q4G0N8 1177 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 MCTP1Q6DN14 999 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 SLAIN1Q8ND83 568 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 CYP2W1Q8TAV3 490 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 KATNBL1Q9H079 304 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 BRMS1Q9HCU9 246 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 KIAA1217Q5T5P2 1943 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 SYNGAP1Q96PV0 1343 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 DDIT3P35638 169 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 PCNX4Q63HM2 1172 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 MCTP2Q6DN12 878 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 FERMT3Q86UX7 667 aa18.2■□□□□ 0.5
HMGA1-204ENST00000401473 MSL3Q8N5Y2 521 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms