RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 CCDC155Q8N6L0 562 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 BLOC1S4Q9NUP1 217 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 SMARCAL1Q9NZC9 954 aa22.96■■□□□ 1.27
CLK3-202ENST00000395066 IPO7O95373 1038 aaKnown RBP22.95■■□□□ 1.27
CLK3-202ENST00000395066 TMED8Q6PL24 325 aaPredicted RBP22.95■■□□□ 1.27
CLK3-202ENST00000395066 LRRC31Q6UY01 552 aa22.95■■□□□ 1.27
CLK3-202ENST00000395066 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.95■■□□□ 1.27
CLK3-202ENST00000395066 BARGINQ6ZT62 677 aa22.95■■□□□ 1.27
CLK3-202ENST00000395066 NOC3LQ8WTT2 800 aaKnown RBP22.95■■□□□ 1.27
CLK3-202ENST00000395066 CCDC47Q96A33 483 aaKnown RBP22.95■■□□□ 1.27
CLK3-202ENST00000395066 AK8Q96MA6 479 aa22.95■■□□□ 1.27
CLK3-202ENST00000395066 SEC63Q9UGP8 760 aaKnown RBP22.95■■□□□ 1.27
CLK3-202ENST00000395066 RNF40O75150 1001 aa22.95■■□□□ 1.26
CLK3-202ENST00000395066 REXO1Q8N1G1 1221 aaKnown RBP22.95■■□□□ 1.26
CLK3-202ENST00000395066 EIF3CLB5ME19 914 aaKnown RBP22.95■■□□□ 1.26
CLK3-202ENST00000395066 MCM3P25205 808 aa22.95■■□□□ 1.26
CLK3-202ENST00000395066 AARSP49588 968 aaKnown RBP eCLIP22.95■■□□□ 1.26
CLK3-202ENST00000395066 LRRC47Q8N1G4 583 aaKnown RBP22.95■■□□□ 1.26
CLK3-202ENST00000395066 GOLGA6L1Q8N7Z2 621 aa22.95■■□□□ 1.26
CLK3-202ENST00000395066 CCDC42Q96M95 316 aa22.95■■□□□ 1.26
CLK3-202ENST00000395066 EIF3CQ99613 913 aaKnown RBP22.95■■□□□ 1.26
CLK3-202ENST00000395066 ARHGAP20Q9P2F6 1191 aa22.95■■□□□ 1.26
CLK3-202ENST00000395066 PPP4CP60510 307 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 EZH2Q15910 746 aaKnown RBP22.94■■□□□ 1.26
CLK3-202ENST00000395066 MAP9Q49MG5 647 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 KCNK18Q7Z418 384 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 ANKRD13CQ8N6S4 541 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 CALML4Q96GE6 196 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 PNMA5Q96PV4 448 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 CUEDC2Q9H467 287 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 MMRN2Q9H8L6 949 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 EHD2Q9NZN4 543 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 DDX60LQ5H9U9 1706 aaKnown RBP22.94■■□□□ 1.26
CLK3-202ENST00000395066 SYF2O95926 243 aaKnown RBP22.94■■□□□ 1.26
CLK3-202ENST00000395066 GNA11P29992 359 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 GSTO1P78417 241 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 GPSM2P81274 684 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 NUP58Q9BVL2 599 aa22.94■■□□□ 1.26
CLK3-202ENST00000395066 RTCBQ9Y3I0 505 aaKnown RBP22.94■■□□□ 1.26
CLK3-202ENST00000395066 EDIL3O43854 480 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 MOCS3O95396 460 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 CXCR5P32302 372 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 KIF5AQ12840 1032 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 FKBP15Q5T1M5 1219 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 C16orf86Q6ZW13 317 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 ZSCAN29Q8IWY8 852 aaPredicted RBP22.93■■□□□ 1.26
CLK3-202ENST00000395066 SECISBP2LQ93073 1101 aaKnown RBP22.93■■□□□ 1.26
CLK3-202ENST00000395066 CCNL1Q9UK58 526 aaPredicted RBP22.93■■□□□ 1.26
CLK3-202ENST00000395066 GRAPQ13588 217 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 CALCRLQ16602 461 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 CNNM4Q6P4Q7 775 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 ZNF804AQ7Z570 1209 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 FAM114A1Q8IWE2 563 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 NEDD1Q8NHV4 660 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 GRAPLQ8TC17 118 aaPredicted RBP22.93■■□□□ 1.26
CLK3-202ENST00000395066 AFAP1L1Q8TED9 768 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 COG1Q8WTW3 980 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 ERGIC2Q96RQ1 377 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 PLEKHA4Q9H4M7 779 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 EFCC1Q9HA90 598 aa22.93■■□□□ 1.26
CLK3-202ENST00000395066 VAV2P52735 878 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 SV2BQ7L1I2 683 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 HDAC7Q8WUI4 952 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 LZTS2Q9BRK4 669 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 HPCAL4Q9UM19 191 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 AHDC1Q5TGY3 1603 aaPredicted RBP22.92■■□□□ 1.26
CLK3-202ENST00000395066 MYH10P35580 1976 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 EIF4A3P38919 411 aaKnown RBP22.92■■□□□ 1.26
CLK3-202ENST00000395066 MATR3P43243 847 aaKnown RBP eCLIP22.92■■□□□ 1.26
CLK3-202ENST00000395066 VWA3BQ502W6 1294 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 CCDC170Q8IYT3 715 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 IFIH1Q9BYX4 1025 aaKnown RBP22.92■■□□□ 1.26
CLK3-202ENST00000395066 NDST4Q9H3R1 872 aa22.92■■□□□ 1.26
CLK3-202ENST00000395066 UFL1O94874 794 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 PRPF6O94906 941 aaKnown RBP22.91■■□□□ 1.26
CLK3-202ENST00000395066 PICALMQ13492 652 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 SPA17Q15506 151 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 UBE2SQ16763 222 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 RETREG2Q8NC44 543 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 IPO4Q8TEX9 1081 aaKnown RBP22.91■■□□□ 1.26
CLK3-202ENST00000395066 MAGEF1Q9HAY2 307 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 GPCPD1Q9NPB8 672 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 SIK3Q9Y2K2 1263 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 AMPD3Q01432 767 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 CENPPQ6IPU0 288 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 RRAGAQ7L523 313 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 EHBP1Q8NDI1 1231 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 LARP4BQ92615 738 aaKnown RBP22.91■■□□□ 1.26
CLK3-202ENST00000395066 PURBQ96QR8 312 aaKnown RBP22.91■■□□□ 1.26
CLK3-202ENST00000395066 CD209Q9NNX6 404 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 LEMD3Q9Y2U8 911 aa22.91■■□□□ 1.26
CLK3-202ENST00000395066 CDK5RAP2Q96SN8 1893 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 TARSL2A2RTX5 802 aaKnown RBP22.9■■□□□ 1.26
CLK3-202ENST00000395066 LRRC53A6NM62 1247 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 NCK2O43639 380 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 MAGEA9P43362 315 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 KIF11P52732 1056 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 ECM1Q16610 540 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 CDK5RAP3Q96JB5 506 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 MTMR9Q96QG7 549 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms