RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 SLC44A4Q53GD3 710 aa9.42□□□□□ -0.9
SYNE1-206ENST00000367253 DSTYKQ6XUX3 929 aa9.42□□□□□ -0.9
SYNE1-206ENST00000367253 JAKMIP2Q96AA8 810 aa9.42□□□□□ -0.9
SYNE1-206ENST00000367253 GABBR1Q9UBS5 961 aa9.42□□□□□ -0.9
SYNE1-206ENST00000367253 CLRN2A0PK11 232 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 HOXA2O43364 376 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ATP2A2P16615 1042 aaKnown RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 PREPLQ4J6C6 727 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 CAPN12Q6ZSI9 719 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 SKAP1Q86WV1 359 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 FRMPD1Q5SYB0 1578 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 RHOBTB1O94844 696 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 LUC7L3O95232 432 aaKnown RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 KCNA2P16389 499 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 PPP1R2P41236 205 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 PHLDB3Q6NSJ2 640 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 PRPF40BQ6NWY9 871 aaKnown RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 SYT10Q6XYQ8 523 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 MAGEB6Q8N7X4 407 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 IFT81Q8WYA0 676 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ATP2A3Q93084 1043 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 GBA2Q9HCG7 927 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 MOSPD1Q9UJG1 213 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 RIPOR2Q9Y4F9 1068 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 USP16Q9Y5T5 823 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 TACC3Q9Y6A5 838 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 METP08581 1390 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 CAPN1P07384 714 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 SLC8A1P32418 973 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 GJA8P48165 433 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ST8SIA6P61647 398 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 NFX1Q12986 1120 aaKnown RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ITGB3BPQ13352 177 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 DGKZQ13574 1117 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 TMEM132BQ14DG7 1078 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 PODNQ7Z5L7 613 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 SPDYE1Q8NFV5 336 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 PHKBQ93100 1093 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 OVOS2A0A0G2JMS6 1433 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 OVOS2A0A0J9YW53 1432 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 OVOS2Q6IE36 1432 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 TGFB2P61812 414 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 CDC42EP1Q00587 391 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ZNF790Q6PG37 636 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 ZNF713Q8N859 430 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 KLHL23Q8NBE8 558 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 RAB3IPQ96QF0 476 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-206ENST00000367253 FAM204AQ9H8W3 233 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 DKK3Q9UBP4 350 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 SETBP1Q9Y6X0 1596 aa9.41□□□□□ -0.9
SYNE1-206ENST00000367253 MYO1CO00159 1063 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 GADD45BO75293 160 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 WBP4O75554 376 aaKnown RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 CYBBP04839 570 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 CCDC157Q569K6 752 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 MICU3Q86XE3 530 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 PALM2Q8IXS6 379 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 KIAA2013Q8IYS2 634 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 VPS37AQ8NEZ2 397 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 UCMAQ8WVF2 138 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 AFG3L2Q9Y4W6 797 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 MADDQ8WXG6 1647 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 MX1P20591 662 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 IGBP1P78318 339 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 CCDC62Q6P9F0 684 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 BBOF1Q8ND07 529 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 VPS50Q96JG6 964 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 TRIM55Q9BYV6 548 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 SUGCTQ9HAC7 445 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 PCDHB9Q9Y5E1 797 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 KDM5AP29375 1690 aaKnown RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 RICTORQ6R327 1708 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 FKTNO75072 461 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 HOXC9P31274 260 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 HPDP32754 393 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 RGS2P41220 211 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 GUCY1B3Q02153 619 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 WASHC5Q12768 1159 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 LONRF3Q496Y0 759 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 CES5AQ6NT32 575 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 CEP68Q76N32 757 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 FOXP4Q8IVH2 680 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 PCSK9Q8NBP7 692 aaKnown RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 SH3GL1Q99961 368 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 SLC26A6Q9BXS9 759 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 CSRNP2Q9H175 543 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 LARSQ9P2J5 1176 aaKnown RBP9.4□□□□□ -0.9
SYNE1-206ENST00000367253 ZNRF3Q9ULT6 936 aa9.4□□□□□ -0.9
SYNE1-206ENST00000367253 LAMC1P11047 1609 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 TRIM75PA6NK02 468 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 FOSP01100 380 aaPredicted RBP9.4□□□□□ -0.91
SYNE1-206ENST00000367253 EEF2P13639 858 aaKnown RBP9.4□□□□□ -0.91
SYNE1-206ENST00000367253 KRT5P13647 590 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 PPARGP37231 505 aaPredicted RBP9.4□□□□□ -0.91
SYNE1-206ENST00000367253 IRX4P78413 519 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 RCN1Q15293 331 aa9.4□□□□□ -0.91
SYNE1-206ENST00000367253 VPS52Q8N1B4 723 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms