RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 NOLC1Q14978 699 aaKnown RBP eCLIP12.42□□□□□ -0.42
SVIP-201ENST00000354193 LRCH2Q5VUJ6 765 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 ATG4CQ96DT6 458 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 SNED1Q8TER0 1413 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 TRAF5O00463 557 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 GTPBP6O43824 516 aaPredicted RBP12.42□□□□□ -0.42
SVIP-201ENST00000354193 DHX40Q8IX18 779 aaKnown RBP12.42□□□□□ -0.42
SVIP-201ENST00000354193 ANKRD35Q8N283 1001 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 LARP4BQ92615 738 aaKnown RBP12.42□□□□□ -0.42
SVIP-201ENST00000354193 DPF2Q92785 391 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 PURBQ96QR8 312 aaKnown RBP12.42□□□□□ -0.42
SVIP-201ENST00000354193 PYM1Q9BRP8 204 aaKnown RBP12.42□□□□□ -0.42
SVIP-201ENST00000354193 SYT17Q9BSW7 474 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.42□□□□□ -0.421e-8■■■■■ 149.1
SVIP-201ENST00000354193 UBXN1Q04323 297 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 CCDC144BQ3MJ40 725 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 ARHGEF16Q5VV41 709 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 CACTINQ8WUQ7 758 aaKnown RBP12.42□□□□□ -0.42
SVIP-201ENST00000354193 NUDT12Q9BQG2 462 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 SLF1Q9BQI6 1058 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 TUBGCP6Q96RT7 1819 aa12.42□□□□□ -0.42
SVIP-201ENST00000354193 ACTN4O43707 911 aaKnown RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 FCER1AP12319 257 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 IBSPP21815 317 aaPredicted RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 IL17AQ16552 155 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 ARL6IP4Q66PJ3 421 aaKnown RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 SNRNP48Q6IEG0 339 aaKnown RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 PRPF38AQ8NAV1 312 aaKnown RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 HPSEQ9Y251 543 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 CACNA1SQ13698 1873 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 UBR3Q6ZT12 1888 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 SBF2Q86WG5 1849 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 KMT5BQ4FZB7 885 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 DNM3Q9UQ16 869 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 NFIBO00712 420 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 IGSF3O75054 1194 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 KIAA1755Q5JYT7 1200 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 ZNF579Q8NAF0 562 aaKnown RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 CNKSR2Q8WXI2 1034 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 TMX2Q9Y320 296 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 NPHP3-ACAD11A0A0J9YXS1 232 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 ARID5AQ03989 594 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 TRAF1Q13077 416 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 RDH13Q8NBN7 331 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 SMCR8Q8TEV9 937 aaPredicted RBP12.41□□□□□ -0.42
SVIP-201ENST00000354193 ZNF577Q9BSK1 485 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 BHMT2Q9H2M3 363 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 AS3MTQ9HBK9 375 aa12.41□□□□□ -0.42
SVIP-201ENST00000354193 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.4□□□□□ -0.42
SVIP-201ENST00000354193 SYCP3Q8IZU3 236 aa12.4□□□□□ -0.42
SVIP-201ENST00000354193 GLT8D2Q9H1C3 349 aa12.4□□□□□ -0.42
SVIP-201ENST00000354193 C4AP0C0L4 1744 aa12.4□□□□□ -0.42
SVIP-201ENST00000354193 CHD4Q14839 1912 aa12.4□□□□□ -0.42
SVIP-201ENST00000354193 TRIM21P19474 475 aaKnown RBP12.4□□□□□ -0.42
SVIP-201ENST00000354193 SIAH1Q8IUQ4 282 aa12.4□□□□□ -0.42
SVIP-201ENST00000354193 NAP1L1P55209 391 aaKnown RBP12.4□□□□□ -0.42
SVIP-201ENST00000354193 TATDN1Q6P1N9 297 aa12.4□□□□□ -0.42
SVIP-201ENST00000354193 LRP5O75197 1615 aa12.4□□□□□ -0.43
SVIP-201ENST00000354193 TAF1LQ8IZX4 1826 aa12.4□□□□□ -0.43
SVIP-201ENST00000354193 PRCPP42785 496 aa12.4□□□□□ -0.43
SVIP-201ENST00000354193 RBM10P98175 930 aaKnown RBP12.4□□□□□ -0.43
SVIP-201ENST00000354193 GSDMAQ96QA5 445 aa12.4□□□□□ -0.43
SVIP-201ENST00000354193 RMDN3Q96TC7 470 aa12.4□□□□□ -0.43
SVIP-201ENST00000354193 ROBO3Q96MS0 1386 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 OFD1O75665 1012 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 FAM13AO94988 1023 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 IPO7O95373 1038 aaKnown RBP12.39□□□□□ -0.43
SVIP-201ENST00000354193 TMEM132AQ24JP5 1023 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 CEP135Q66GS9 1140 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 HAUS3Q68CZ6 603 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 GMLQ99445 158 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 MRIQ9BWK5 157 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 RNF146Q9NTX7 359 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 DUOX1Q9NRD9 1551 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 FOSP01100 380 aaPredicted RBP12.39□□□□□ -0.43
SVIP-201ENST00000354193 TNNT1P13805 278 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 PDE4CQ08493 712 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 MAP1SQ66K74 1059 aaPredicted RBP12.39□□□□□ -0.43
SVIP-201ENST00000354193 FAM83AQ86UY5 434 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 IGSF22Q8N9C0 903 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 ZNF280CQ8ND82 737 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 DDX12PQ92771 950 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 TRERF1Q96PN7 1200 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 TSG101Q99816 390 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 CRACR2AQ9BSW2 395 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 FKBP1AP62942 108 aaKnown RBP12.39□□□□□ -0.43
SVIP-201ENST00000354193 MORC3Q14149 939 aa12.39□□□□□ -0.43
SVIP-201ENST00000354193 RPS12P25398 132 aaKnown RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 APOBEC3FQ8IUX4 373 aaKnown RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 MYCT1Q8N699 235 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 BANK1Q8NDB2 785 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 TNFRSF25Q93038 417 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 GPRC5DQ9NZD1 345 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 LAMA4Q16363 1823 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 VCAM1P19320 739 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 BAATQ14032 418 aaPredicted RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 UTP14CQ5TAP6 766 aaKnown RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 RNF207Q6ZRF8 634 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 FAM160B2Q86V87 743 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 PDLIM2Q96JY6 352 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms