RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 CCNI2Q6ZMN8 369 aaPredicted RBP22.1■■□□□ 1.13
CRLF3-201ENST00000324238 GOLGA6L1Q8N7Z2 621 aa22.1■■□□□ 1.13
CRLF3-201ENST00000324238 DHTKD1Q96HY7 919 aaPredicted RBP22.1■■□□□ 1.13
CRLF3-201ENST00000324238 RASSF4Q9H2L5 321 aa22.1■■□□□ 1.13
CRLF3-201ENST00000324238 MYMKA6NI61 221 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 GFPT1Q06210 699 aaPredicted RBP22.09■■□□□ 1.13
CRLF3-201ENST00000324238 SBK1Q52WX2 424 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 ZC3H4Q9UPT8 1303 aaKnown RBP22.09■■□□□ 1.13
CRLF3-201ENST00000324238 UTRNP46939 3433 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 RASA1P20936 1047 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 CACNB1Q02641 598 aaPredicted RBP22.09■■□□□ 1.13
CRLF3-201ENST00000324238 DNAAF5Q86Y56 855 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 NYXQ9GZU5 481 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 PCDHA13Q9Y5I0 950 aa22.09■■□□□ 1.13
CRLF3-201ENST00000324238 LRRC53A6NM62 1247 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 EIF3CLB5ME19 914 aaKnown RBP22.08■■□□□ 1.13
CRLF3-201ENST00000324238 PRPF6O94906 941 aaKnown RBP22.08■■□□□ 1.13
CRLF3-201ENST00000324238 TDP2O95551 362 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 SSBP05455 408 aaKnown RBP eCLIP22.08■■□□□ 1.13
CRLF3-201ENST00000324238 CREG2Q8IUH2 290 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 EIF3CQ99613 913 aaKnown RBP22.08■■□□□ 1.13
CRLF3-201ENST00000324238 BTDP43251 543 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 KIF11P52732 1056 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 RASSF7Q02833 373 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 NONOQ15233 471 aaKnown RBP eCLIP22.08■■□□□ 1.13
CRLF3-201ENST00000324238 KCNK18Q7Z418 384 aa22.08■■□□□ 1.13
CRLF3-201ENST00000324238 USP17L5A8MUK1 530 aa22.08■■□□□ 1.12
CRLF3-201ENST00000324238 RIMBP2O15034 1052 aa22.08■■□□□ 1.12
CRLF3-201ENST00000324238 UFL1O94874 794 aa22.08■■□□□ 1.12
CRLF3-201ENST00000324238 VAV2P52735 878 aa22.08■■□□□ 1.12
CRLF3-201ENST00000324238 MKRN1Q9UHC7 482 aaKnown RBP22.08■■□□□ 1.12
CRLF3-201ENST00000324238 ESYT3A0FGR9 886 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 ZSCAN5CA6NGD5 496 aaPredicted RBP22.07■■□□□ 1.12
CRLF3-201ENST00000324238 SLC37A4O43826 429 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 RPS6KA4O75676 772 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 SLC10A5Q5PT55 438 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 FAM196AQ6ZSG2 479 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 ACBD3Q9H3P7 528 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 COL14A1Q05707 1796 aaKnown RBP22.07■■□□□ 1.12
CRLF3-201ENST00000324238 PALM3A6NDB9 673 aaPredicted RBP22.07■■□□□ 1.12
CRLF3-201ENST00000324238 EYA3Q99504 573 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 NDST4Q9H3R1 872 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 SH3GLB2Q9NR46 395 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 A0A1B0GUL6 1792 aa22.07■■□□□ 1.12
CRLF3-201ENST00000324238 NEK8Q86SG6 692 aa22.06■■□□□ 1.12
CRLF3-201ENST00000324238 MED4Q9NPJ6 270 aa22.06■■□□□ 1.12
CRLF3-201ENST00000324238 PACSIN2Q9UNF0 486 aaPredicted RBP22.06■■□□□ 1.12
CRLF3-201ENST00000324238 TMED8Q6PL24 325 aaPredicted RBP22.06■■□□□ 1.12
CRLF3-201ENST00000324238 AMOTL1Q8IY63 956 aa22.06■■□□□ 1.12
CRLF3-201ENST00000324238 TEX11Q8IYF3 940 aa22.06■■□□□ 1.12
CRLF3-201ENST00000324238 LRRC47Q8N1G4 583 aaKnown RBP22.06■■□□□ 1.12
CRLF3-201ENST00000324238 PROCA1Q8NCQ7 364 aaPredicted RBP22.06■■□□□ 1.12
CRLF3-201ENST00000324238 SNX12Q9UMY4 172 aa22.06■■□□□ 1.12
CRLF3-201ENST00000324238 COL16A1Q07092 1604 aaPredicted RBP22.06■■□□□ 1.12
CRLF3-201ENST00000324238 GRB10Q13322 594 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 TDRD12Q587J7 1177 aaKnown RBP22.05■■□□□ 1.12
CRLF3-201ENST00000324238 CCDC47Q96A33 483 aaKnown RBP22.05■■□□□ 1.12
CRLF3-201ENST00000324238 CEP95Q96GE4 821 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 BLOC1S4Q9NUP1 217 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 ROBO1Q9Y6N7 1651 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 BICDL2A1A5D9 508 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 GOLGA6BA6NDN3 693 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 GPSM2P81274 684 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 CKAP4Q07065 602 aaKnown RBP22.05■■□□□ 1.12
CRLF3-201ENST00000324238 VWA3BQ502W6 1294 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 SOGA3Q5TF21 947 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 PLCD3Q8N3E9 789 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 FGFBP2Q9BYJ0 223 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 BAG3O95817 575 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 SLC1A4P43007 532 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 MAP9Q49MG5 647 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 CNBD1Q8NA66 436 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 SPATA4Q8NEY3 305 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 MXD3Q9BW11 206 aa22.05■■□□□ 1.12
CRLF3-201ENST00000324238 C6orf229H3BNL8 230 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 MAGEA1P43355 309 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 CDK8P49336 464 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 GNAQP50148 359 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 UBE2SQ16763 222 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 SPTY2D1Q68D10 685 aaPredicted RBP22.04■■□□□ 1.12
CRLF3-201ENST00000324238 KCTD16Q68DU8 428 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 SV2BQ7L1I2 683 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 NELFCDQ8IXH7 590 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 TSEN2Q8NCE0 465 aaKnown RBP22.04■■□□□ 1.12
CRLF3-201ENST00000324238 MTMR8Q96EF0 704 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 CALML4Q96GE6 196 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 CDK5RAP3Q96JB5 506 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 GPCPD1Q9NPB8 672 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 TUBB4BP68371 445 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 EHBP1Q8NDI1 1231 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 PNMA5Q96PV4 448 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 OSBPL9Q96SU4 736 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 C7orf25Q9BPX7 421 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 NUP58Q9BVL2 599 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 ZMYND12Q9H0C1 365 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 DNAJC5Q9H3Z4 198 aa22.04■■□□□ 1.12
CRLF3-201ENST00000324238 TACC1O75410 805 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 CCDC181Q5TID7 509 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 CCDC170Q8IYT3 715 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 SH2D4AQ9H788 454 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms