RNA–Protein interactions for RNA: ENST00000311626.8

HOXB3-201, Transcript of homeobox B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXB3, Length 2,642 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-201ENST00000311626 CDK5RAP3Q96JB5 506 aa28.24■■■□□ 2.11
HOXB3-201ENST00000311626 MMRN2Q9H8L6 949 aa28.24■■■□□ 2.11
HOXB3-201ENST00000311626 SLC16A2P36021 539 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 CNNM4Q6P4Q7 775 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 C2CD5Q86YS7 1000 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 MTMR9Q96QG7 549 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 KRT86O43790 486 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 GTF2IP78347 998 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 AMPD3Q01432 767 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 VPS72Q15906 364 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 ECM1Q16610 540 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 MLXIPQ9HAP2 919 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 JADE2Q9NQC1 790 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 BTAF1O14981 1849 aa28.23■■■□□ 2.11
HOXB3-201ENST00000311626 RGL2O15211 777 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 PSMB7Q99436 277 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 LRRC4BQ9NT99 713 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 CCDC96Q2M329 555 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 FKBP15Q5T1M5 1219 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 CAGE1Q8TC20 777 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 EP400Q96L91 3159 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 IPO7O95373 1038 aaKnown RBP28.22■■■□□ 2.11
HOXB3-201ENST00000311626 FAM114A1Q8IWE2 563 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 SNX29Q8TEQ0 813 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 LARP4BQ92615 738 aaKnown RBP28.22■■■□□ 2.11
HOXB3-201ENST00000311626 CCDC42Q96M95 316 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 NUP58Q9BVL2 599 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 MAGEF1Q9HAY2 307 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 TBC1D7Q9P0N9 293 aa28.22■■■□□ 2.11
HOXB3-201ENST00000311626 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.21■■■□□ 2.11
HOXB3-201ENST00000311626 TNNT3P45378 269 aaPredicted RBP28.21■■■□□ 2.11
HOXB3-201ENST00000311626 ADCY7P51828 1080 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 RIOX1Q9H6W3 641 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 EIF3CLB5ME19 914 aaKnown RBP28.21■■■□□ 2.11
HOXB3-201ENST00000311626 RAD21O60216 631 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 USP14P54578 494 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 FAM193AP78312 1265 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 C2orf54Q08AI8 447 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 CENPPQ6IPU0 288 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 ANKRD13CQ8N6S4 541 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 EIF3CQ99613 913 aaKnown RBP28.21■■■□□ 2.11
HOXB3-201ENST00000311626 MTMR4Q9NYA4 1195 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 ARHGAP20Q9P2F6 1191 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 DAGLAQ9Y4D2 1042 aa28.21■■■□□ 2.11
HOXB3-201ENST00000311626 CDK5RAP2Q96SN8 1893 aa28.2■■■□□ 2.11
HOXB3-201ENST00000311626 VWA3BQ502W6 1294 aa28.2■■■□□ 2.1
HOXB3-201ENST00000311626 PAPD7Q5XG87 772 aaKnown RBP28.2■■■□□ 2.1
HOXB3-201ENST00000311626 NDST4Q9H3R1 872 aa28.2■■■□□ 2.1
HOXB3-201ENST00000311626 KANSL2Q9H9L4 492 aa28.2■■■□□ 2.1
HOXB3-201ENST00000311626 DDX4Q9NQI0 724 aaKnown RBP28.2■■■□□ 2.1
HOXB3-201ENST00000311626 PPP1R11O60927 126 aaPredicted RBP28.2■■■□□ 2.1
HOXB3-201ENST00000311626 SSBP05455 408 aaKnown RBP eCLIP28.2■■■□□ 2.1
HOXB3-201ENST00000311626 IL1R1P14778 569 aa28.2■■■□□ 2.1
HOXB3-201ENST00000311626 ZSCAN29Q8IWY8 852 aaPredicted RBP28.2■■■□□ 2.1
HOXB3-201ENST00000311626 SMARCAL1Q9NZC9 954 aa28.2■■■□□ 2.1
HOXB3-201ENST00000311626 TBC1D16Q8TBP0 767 aa28.19■■■□□ 2.1
HOXB3-201ENST00000311626 DDX12PQ92771 950 aa28.19■■■□□ 2.1
HOXB3-201ENST00000311626 ERGIC2Q96RQ1 377 aa28.19■■■□□ 2.1
HOXB3-201ENST00000311626 CAPN6Q9Y6Q1 641 aa28.19■■■□□ 2.1
HOXB3-201ENST00000311626 MOCS3O95396 460 aa28.19■■■□□ 2.1
HOXB3-201ENST00000311626 EIF4A3P38919 411 aaKnown RBP28.19■■■□□ 2.1
HOXB3-201ENST00000311626 CACNB1Q02641 598 aaPredicted RBP28.19■■■□□ 2.1
HOXB3-201ENST00000311626 RRAGAQ7L523 313 aa28.19■■■□□ 2.1
HOXB3-201ENST00000311626 ZFP91Q96JP5 570 aaPredicted RBP28.19■■■□□ 2.1
HOXB3-201ENST00000311626 ATP2B4P23634 1241 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 RAD51AP2Q09MP3 1159 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 CALCOCO1Q9P1Z2 691 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 SIK3Q9Y2K2 1263 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 KIF5AQ12840 1032 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 UNC13DQ70J99 1090 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 KCTD1Q719H9 257 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 FGFBP2Q9BYJ0 223 aa28.18■■■□□ 2.1
HOXB3-201ENST00000311626 SERPINB2P05120 415 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 MYBL2P10244 700 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 SCNN1DP51172 638 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 APBA1Q02410 837 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 RETREG2Q8NC44 543 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 RAD54LQ92698 747 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 TANGO6Q9C0B7 1094 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 EHD2Q9NZN4 543 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 CXCR5P32302 372 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 GPS2Q13227 327 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 SPA17Q15506 151 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 CCDC170Q8IYT3 715 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 ADGRF4Q8IZF3 695 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 TXLNBQ8N3L3 684 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 SECISBP2LQ93073 1101 aaKnown RBP28.17■■■□□ 2.1
HOXB3-201ENST00000311626 JMJD4Q9H9V9 463 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 ZNF831Q5JPB2 1677 aa28.17■■■□□ 2.1
HOXB3-201ENST00000311626 LRRC53A6NM62 1247 aa28.16■■■□□ 2.1
HOXB3-201ENST00000311626 PLCG2P16885 1265 aa28.16■■■□□ 2.1
HOXB3-201ENST00000311626 VAV2P52735 878 aa28.16■■■□□ 2.1
HOXB3-201ENST00000311626 EZH2Q15910 746 aaKnown RBP28.16■■■□□ 2.1
HOXB3-201ENST00000311626 TMEM266Q2M3C6 531 aa28.16■■■□□ 2.1
HOXB3-201ENST00000311626 PCDHA13Q9Y5I0 950 aa28.16■■■□□ 2.1
HOXB3-201ENST00000311626 MATR3P43243 847 aaKnown RBP eCLIP28.16■■■□□ 2.12e-7■■□□□ 14.4
HOXB3-201ENST00000311626 TAF3Q5VWG9 929 aa28.16■■■□□ 2.1
HOXB3-201ENST00000311626 RIN2Q8WYP3 895 aaPredicted RBP28.16■■■□□ 2.1
HOXB3-201ENST00000311626 IFIH1Q9BYX4 1025 aaKnown RBP28.16■■■□□ 2.1
HOXB3-201ENST00000311626 DEF6Q9H4E7 631 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms