RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 E9PMD0 336 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 HSPD1P10809 573 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 BBOF1Q8ND07 529 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ZNF594Q96JF6 807 aaPredicted RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 TIAM1Q13009 1591 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ZKSCAN8Q15776 578 aaPredicted RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 TRIM60Q495X7 471 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 FBXO41Q8TF61 875 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 HYOU1Q9Y4L1 999 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 E2F6O75461 281 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 HADHAP40939 763 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 LMNB2Q03252 620 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 OTUD7BQ6GQQ9 843 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 DARS2Q6PI48 645 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 TRIM42Q8IWZ5 723 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 KPNA2P52292 529 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 SULF1Q8IWU6 871 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 XPOTO43592 962 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 CREB3O43889 395 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ZBED2Q9BTP6 218 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 CBX8Q9HC52 389 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ATG3Q9NT62 314 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ARHGEF11O15085 1522 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ELF1P32519 619 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 PMS1P54277 932 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 RWDD4Q6NW29 188 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 PPP1R16BQ96T49 567 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 MSH2P43246 934 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 POLR2FP61218 127 aaKnown RBP12.34□□□□□ -0.43
PTPN4-201ENST00000263708 RNF139Q8WU17 664 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 ZNF233A6NK53 670 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 LIG3P49916 1009 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 TIMM10P62072 90 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 MESDQ14696 234 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 PCGF5Q86SE9 256 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 TEKT3Q9BXF9 490 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 TXLNGQ9NUQ3 528 aa12.34□□□□□ -0.43
PTPN4-201ENST00000263708 KHDRBS2Q5VWX1 349 aaKnown RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 PDXDC1Q6P996 788 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 CDC37L1Q7L3B6 337 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 FASTKD5Q7L8L6 764 aaKnown RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MCF2P10911 925 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MECOMQ03112 1051 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 RPAINQ86UA6 219 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 C7orf31Q8N865 590 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 B4GALNT2Q8NHY0 566 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 PACSIN2Q9UNF0 486 aaPredicted RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 ZNF513Q8N8E2 541 aaPredicted RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 PCDHA12Q9UN75 941 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 NEMP1O14524 444 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 PPARGP37231 505 aaPredicted RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 IL16Q14005 1332 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 NESP48681 1621 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MCF2L2Q86YR7 1114 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 ELMOD1Q8N336 334 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 RAPGEF5Q92565 580 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 ARMCX3Q9UH62 379 aaPredicted RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MAP3K5Q99683 1374 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 ARAP1Q96P48 1450 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 ANP32DO95626 131 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 ALDH1B1P30837 517 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 SMAP1Q8IYB5 467 aaPredicted RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 CLCA2Q9UQC9 943 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MRPL11Q9Y3B7 192 aaKnown RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 WDR91A4D1P6 747 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MXD4Q14582 209 aaPredicted RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 KIFC3Q9BVG8 833 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 NOS1P29475 1434 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 TOP2BQ02880 1626 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 SPATS2Q86XZ4 545 aaKnown RBP12.33□□□□□ -0.44
PTPN4-201ENST00000263708 MED4Q9NPJ6 270 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 BTG4Q9NY30 223 aa12.33□□□□□ -0.44
PTPN4-201ENST00000263708 LMTK3Q96Q04 1460 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 TMCC1O94876 653 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 LMNAP02545 664 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 ZSCAN26Q16670 478 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 SPATA5Q8NB90 893 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 LLPHQ9BRT6 129 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 TBK1Q9UHD2 729 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 DRP2Q13474 957 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 IMPG1Q17R60 797 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 ZNF654Q8IZM8 581 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 RETREG2Q8NC44 543 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 SRPK1Q96SB4 655 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 ZBTB18Q99592 522 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 PRDM5Q9NQX1 630 aaPredicted RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 EFCAB5A4FU69 1503 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 LRRC47Q8N1G4 583 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 LINS1Q8NG48 757 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 FGFR1OP2Q9NVK5 253 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 TSR3Q9UJK0 312 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 H0YC42 278 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 HNRNPDLO14979 420 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 BASP1P80723 227 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 DCAF15Q66K64 600 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 KCTD16Q68DU8 428 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 C8orf58Q8NAV2 365 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 SPZ1Q9BXG8 430 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 PALMDQ9NP74 551 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 KDM2BQ8NHM5 1336 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms