RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 TRIM58Q8NG06 486 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 TAF4BQ92750 862 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 RIOK1Q9BRS2 568 aaKnown RBP13.26□□□□□ -0.29
USHBP1-201ENST00000252597 CCDC113Q9H0I3 377 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 NDST4Q9H3R1 872 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 HYOU1Q9Y4L1 999 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 ITIH6Q6UXX5 1313 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 TLDC2A0PJX2 215 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 MYO1FO00160 1098 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 SETQ01105 290 aaPredicted RBP13.26□□□□□ -0.29
USHBP1-201ENST00000252597 IFT88Q13099 833 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 SV2BQ7L1I2 683 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 DDX42Q86XP3 938 aaKnown RBP eCLIP13.26□□□□□ -0.29
USHBP1-201ENST00000252597 FAM114A1Q8IWE2 563 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 TBCKQ8TEA7 893 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 SNX29Q8TEQ0 813 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 TBC1D5Q92609 795 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 FAM84BQ96KN1 310 aaPredicted RBP13.26□□□□□ -0.29
USHBP1-201ENST00000252597 ARHGAP20Q9P2F6 1191 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 SHANK3Q9BYB0 1731 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 BICDL2A1A5D9 508 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 CEP104O60308 925 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 OPA1O60313 960 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 OR52Z1P0C646 297 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 FAM153BP0C7A2 387 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 CCNE1P24864 410 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 FAM153CQ494X1 144 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 TXNRD3Q86VQ6 643 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 POTEDQ86YR6 584 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 DUSP9Q99956 384 aaKnown RBP13.25□□□□□ -0.29
USHBP1-201ENST00000252597 CCDC87Q9NVE4 849 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 FAM153AQ9UHL3 310 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 SNX12Q9UMY4 172 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 GLI3P10071 1580 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 PNPLA7Q6ZV29 1317 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 MYH8P13535 1937 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 ARFGEF2Q9Y6D5 1785 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 KCNK3O14649 394 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 TUBBP07437 444 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 FAM98CQ17RN3 349 aaKnown RBP13.25□□□□□ -0.29
USHBP1-201ENST00000252597 KIAA0753Q2KHM9 967 aa13.25□□□□□ -0.29
USHBP1-201ENST00000252597 LRRC47Q8N1G4 583 aaKnown RBP13.25□□□□□ -0.29
USHBP1-201ENST00000252597 UBLCP1Q8WVY7 318 aaPredicted RBP13.25□□□□□ -0.29
USHBP1-201ENST00000252597 MPHOSPH10O00566 681 aaKnown RBP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 KCNQ2O43526 872 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 SRGNP10124 158 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 CORO7P57737 925 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 DCAF17Q5H9S7 520 aaPredicted RBP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 TTI2Q6NXR4 508 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 WDR93Q6P2C0 686 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 FAM133AQ8N9E0 248 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 NOX5Q96PH1 765 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 PIGSQ96S52 555 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 LSM14BQ9BX40 385 aaKnown RBP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 TRIM9Q9C026 710 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 PCDHA6Q9UN73 950 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 PCDHA8Q9Y5H6 950 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 TOGARAM1Q9Y4F4 1720 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 AGPSO00116 658 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 PALMO75781 387 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 DDAH1O94760 285 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 MKRN4PQ13434 485 aaPredicted RBP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 LRRC15Q8TF66 581 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 ZIM3Q96PE6 472 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 SPAG5Q96R06 1193 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 PYM1Q9BRP8 204 aaKnown RBP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 SALL4Q9UJQ4 1053 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 AMPD3Q01432 767 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 NONOQ15233 471 aaKnown RBP eCLIP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 ZNF512BQ96KM6 892 aaPredicted RBP13.24□□□□□ -0.29
USHBP1-201ENST00000252597 DPH5Q9H2P9 285 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 STIM2Q9P246 746 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 TNS2Q63HR2 1409 aa13.24□□□□□ -0.29
USHBP1-201ENST00000252597 ECM2O94769 699 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-201ENST00000252597 TUBB4BP68371 445 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 PPFIA1Q13136 1202 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 UBE2SQ16763 222 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 TAX1BP1Q86VP1 789 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 NBPF5PQ86XG9 351 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-201ENST00000252597 SH3RF3Q8TEJ3 882 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-201ENST00000252597 MTMR8Q96EF0 704 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 DNAJC7Q99615 494 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 JPH2Q9BR39 696 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-201ENST00000252597 THAP9Q9H5L6 903 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 MINPP1Q9UNW1 487 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 BCS1LQ9Y276 419 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 LRRC10BA6NIK2 292 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 CLSTN1O94985 981 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 TDP2O95551 362 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 GLI1P08151 1106 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 IL6STP40189 918 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-201ENST00000252597 IKQ13123 557 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-201ENST00000252597 SCLT1Q96NL6 688 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 NUP58Q9BVL2 599 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 SPATA31A1Q5TZJ5 1347 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 PPP2R5BQ15173 497 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 CNNM4Q6P4Q7 775 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 TICAM2Q86XR7 235 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 CREG2Q8IUH2 290 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 ZNF34Q8IZ26 560 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms