RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W TY1A-DR1Q03856 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-ML1Q04706 440 aaKnown RBP8.35□□□□□ -1.07
PRE1YER012W TY1A-BRQ12217 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-NL2Q12470 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-GR2Q12485 440 aa8.35□□□□□ -1.07
PRE1YER012W SEC2P17065 759 aa8.34□□□□□ -1.07
PRE1YER012W SAS4Q04003 481 aa8.34□□□□□ -1.07
PRE1YER012W NUP42P49686 430 aaKnown RBP8.33□□□□□ -1.08
PRE1YER012W SRC1Q03707 834 aa8.33□□□□□ -1.08
PRE1YER012W ERF2Q06551 359 aa8.33□□□□□ -1.08
PRE1YER012W DIT2P21595 489 aa8.32□□□□□ -1.08
PRE1YER012W KEX2P13134 814 aa8.31□□□□□ -1.08
PRE1YER012W PSE1P32337 1089 aaKnown RBP8.31□□□□□ -1.08
PRE1YER012W AMS1P22855 1083 aa8.3□□□□□ -1.08
PRE1YER012W RRN7P40992 514 aa8.26□□□□□ -1.09
PRE1YER012W YEL077CQ3E7X8 1277 aa8.24□□□□□ -1.09
PRE1YER012W MRF1P30775 413 aaPredicted RBP8.23□□□□□ -1.09
PRE1YER012W SPT16P32558 1035 aaKnown RBP8.23□□□□□ -1.09
PRE1YER012W CST6P40535 587 aa8.22□□□□□ -1.09
PRE1YER012W ERG12P07277 443 aa8.21□□□□□ -1.1
PRE1YER012W TEA1P47988 759 aa8.2□□□□□ -1.1
PRE1YER012W NIS1P53939 407 aa8.19□□□□□ -1.1
PRE1YER012W CLB5P30283 435 aa8.18□□□□□ -1.1
PRE1YER012W CLA4P48562 842 aa8.18□□□□□ -1.1
PRE1YER012W FRK1Q03002 865 aaPredicted RBP8.18□□□□□ -1.1
PRE1YER012W PAC1P39946 494 aaKnown RBP8.16□□□□□ -1.1
PRE1YER012W RQC2Q12532 1038 aaKnown RBP8.15□□□□□ -1.1
PRE1YER012W AIR1P40507 360 aaKnown RBP8.14□□□□□ -1.11
PRE1YER012W LAM6Q08001 693 aa8.14□□□□□ -1.11
PRE1YER012W TUB4P53378 473 aa8.13□□□□□ -1.11
PRE1YER012W AGE1Q04412 482 aa8.13□□□□□ -1.11
PRE1YER012W TRK1P12685 1235 aa8.12□□□□□ -1.11
PRE1YER012W PAT1P25644 796 aaKnown RBP8.12□□□□□ -1.11
PRE1YER012W GLC3P32775 704 aa8.12□□□□□ -1.11
PRE1YER012W BDP1P46678 594 aa8.12□□□□□ -1.11
PRE1YER012W SIT4P20604 311 aa8.11□□□□□ -1.11
PRE1YER012W FPK1P53739 893 aa8.11□□□□□ -1.11
PRE1YER012W YNL115CP53925 644 aa8.11□□□□□ -1.11
PRE1YER012W SCJ1P25303 377 aa8.09□□□□□ -1.11
PRE1YER012W YMR196WQ04336 1088 aa8.08□□□□□ -1.12
PRE1YER012W RTF1P53064 558 aa8.07□□□□□ -1.12
PRE1YER012W ATF2P53296 535 aa8.07□□□□□ -1.12
PRE1YER012W SLY41P22215 453 aa8.06□□□□□ -1.12
PRE1YER012W PUS5Q06244 254 aa8.05□□□□□ -1.12
PRE1YER012W YNR021WP53723 404 aaKnown RBP8.03□□□□□ -1.12
PRE1YER012W MOD5P07884 428 aa8.02□□□□□ -1.13
PRE1YER012W TYW1Q08960 810 aaKnown RBP8.01□□□□□ -1.13
PRE1YER012W ESS1P22696 170 aa7.98□□□□□ -1.13
PRE1YER012W MMP1Q12372 583 aa7.97□□□□□ -1.13
PRE1YER012W HST2P53686 357 aa7.96□□□□□ -1.14
PRE1YER012W KXD1P53158 218 aa7.95□□□□□ -1.14
PRE1YER012W YDL206WQ12424 762 aa7.95□□□□□ -1.14
PRE1YER012W PDC1P06169 563 aaKnown RBP7.94□□□□□ -1.14
PRE1YER012W TRM1P15565 570 aaKnown RBP7.94□□□□□ -1.14
PRE1YER012W YJU3P28321 313 aa7.94□□□□□ -1.14
PRE1YER012W HED1Q03937 162 aa7.94□□□□□ -1.14
PRE1YER012W CDC4P07834 779 aa7.93□□□□□ -1.14
PRE1YER012W GLN1P32288 370 aaKnown RBP7.93□□□□□ -1.14
PRE1YER012W TBF1Q02457 562 aa7.93□□□□□ -1.14
PRE1YER012W KTR1P27810 393 aaKnown RBP7.92□□□□□ -1.14
PRE1YER012W BRE2P43132 505 aa7.92□□□□□ -1.14
PRE1YER012W PUS6P53294 404 aa7.92□□□□□ -1.14
PRE1YER012W MET32Q12041 191 aa7.92□□□□□ -1.14
PRE1YER012W HXT10P43581 546 aa7.91□□□□□ -1.14
PRE1YER012W RRD1P40454 393 aaKnown RBP7.89□□□□□ -1.15
PRE1YER012W AIM7Q12156 149 aa7.88□□□□□ -1.15
PRE1YER012W PKH3Q03306 898 aaPredicted RBP7.87□□□□□ -1.15
PRE1YER012W ASH1P34233 588 aa7.86□□□□□ -1.15
PRE1YER012W RPA14P50106 137 aa7.86□□□□□ -1.15
PRE1YER012W ALR1Q08269 859 aa7.86□□□□□ -1.15
PRE1YER012W TPD3P31383 635 aa7.84□□□□□ -1.15
PRE1YER012W CSN12P47130 423 aa7.84□□□□□ -1.15
PRE1YER012W YPR097WQ06839 1073 aa7.84□□□□□ -1.15
PRE1YER012W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
PRE1YER012W GCR2Q01722 534 aa7.83□□□□□ -1.16
PRE1YER012W KIN1P13185 1064 aa7.81□□□□□ -1.16
PRE1YER012W ARG8P18544 423 aa7.81□□□□□ -1.16
PRE1YER012W KIP2P28743 706 aa7.81□□□□□ -1.16
PRE1YER012W SYH1Q02875 849 aaKnown RBP7.81□□□□□ -1.16
PRE1YER012W ITT1Q04638 464 aa7.81□□□□□ -1.16
PRE1YER012W GAR1P28007 205 aaKnown RBP7.8□□□□□ -1.16
PRE1YER012W RSC30P38781 883 aa7.8□□□□□ -1.16
PRE1YER012W HST3P53687 447 aa7.8□□□□□ -1.16
PRE1YER012W LEU3P08638 886 aa7.79□□□□□ -1.16
PRE1YER012W AFT1P22149 690 aa7.79□□□□□ -1.16
PRE1YER012W IXR1P33417 597 aa7.78□□□□□ -1.16
PRE1YER012W YJR115WP47152 169 aa7.75□□□□□ -1.17
PRE1YER012W RAD59Q12223 238 aa7.75□□□□□ -1.17
PRE1YER012W MET22P32179 357 aa7.74□□□□□ -1.17
PRE1YER012W GBP2P25555 427 aaKnown RBP RIP-Chip data7.7□□□□□ -1.18not detected
PRE1YER012W VAC17P25591 423 aa7.7□□□□□ -1.18
PRE1YER012W GUA1P38625 525 aaKnown RBP7.7□□□□□ -1.18
PRE1YER012W UGA3P26370 528 aa7.69□□□□□ -1.18
PRE1YER012W RPN1P38764 993 aaKnown RBP7.69□□□□□ -1.18
PRE1YER012W RGA1P39083 1007 aa7.69□□□□□ -1.18
PRE1YER012W APP1P53933 587 aa7.69□□□□□ -1.18
PRE1YER012W MSB3P48566 633 aaPredicted RBP7.67□□□□□ -1.18
PRE1YER012W YDR444WQ04093 687 aa7.67□□□□□ -1.18
PRE1YER012W FIG4P42837 879 aa7.66□□□□□ -1.18
PRE1YER012W ENV9Q08651 330 aa7.66□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 46.1 ms