RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C TY1B-MR1Q04214 1755 aa6.17□□□□□ -1.42
CDC48YDL126C TY1B-MR2Q04670 1755 aaKnown RBP6.17□□□□□ -1.42
CDC48YDL126C TY1B-LR1Q12088 1755 aaKnown RBP6.17□□□□□ -1.42
CDC48YDL126C TY1B-NL1Q12112 1755 aa6.17□□□□□ -1.42
CDC48YDL126C TY1B-GR1Q12141 1755 aa6.17□□□□□ -1.42
CDC48YDL126C TY1B-BLQ12490 1755 aa6.17□□□□□ -1.42
CDC48YDL126C VMA1P17255 1071 aaKnown RBP6.16□□□□□ -1.42
CDC48YDL126C PSE1P32337 1089 aaKnown RBP6.16□□□□□ -1.42
CDC48YDL126C ORC6P38826 435 aa6.16□□□□□ -1.42
CDC48YDL126C ATG32P40458 529 aa6.16□□□□□ -1.42
CDC48YDL126C ATG36P46983 293 aa6.16□□□□□ -1.42
CDC48YDL126C RPA190P10964 1664 aaKnown RBP6.16□□□□□ -1.42
CDC48YDL126C NTE1Q04958 1679 aa6.15□□□□□ -1.42
CDC48YDL126C BIM1P40013 344 aa6.15□□□□□ -1.42
CDC48YDL126C ATF2P53296 535 aa6.15□□□□□ -1.42
CDC48YDL126C YGR273CP53329 174 aa6.15□□□□□ -1.42
CDC48YDL126C GAP1P19145 602 aaPredicted RBP6.15□□□□□ -1.43
CDC48YDL126C TRM732Q03496 1420 aa6.14□□□□□ -1.43
CDC48YDL126C DNF1P32660 1571 aa6.13□□□□□ -1.43
CDC48YDL126C GEF1P37020 779 aa6.13□□□□□ -1.43
CDC48YDL126C SAM3Q08986 587 aa6.13□□□□□ -1.43
CDC48YDL126C RPO21P04050 1733 aaKnown RBP6.12□□□□□ -1.43
CDC48YDL126C KEX1P09620 729 aa6.12□□□□□ -1.43
CDC48YDL126C SSA1P10591 642 aaKnown RBP6.12□□□□□ -1.43
CDC48YDL126C AIM44Q99299 758 aa6.12□□□□□ -1.43
CDC48YDL126C SNT2P53127 1403 aa6.11□□□□□ -1.43
CDC48YDL126C NOP2P40991 618 aaKnown RBP6.11□□□□□ -1.43
CDC48YDL126C ERG12P07277 443 aa6.1□□□□□ -1.43
CDC48YDL126C GUT1P32190 709 aa6.1□□□□□ -1.43
CDC48YDL126C SLX8P40072 274 aa6.1□□□□□ -1.43
CDC48YDL126C CSN12P47130 423 aa6.1□□□□□ -1.43
CDC48YDL126C HGH1P48362 394 aaKnown RBP6.1□□□□□ -1.43
CDC48YDL126C GEA1P47102 1408 aaPredicted RBP6.1□□□□□ -1.43
CDC48YDL126C ILV3P39522 585 aaKnown RBP6.09□□□□□ -1.43
CDC48YDL126C RGR1P19263 1082 aa6.09□□□□□ -1.43
CDC48YDL126C NOB1Q08444 459 aaKnown RBP6.09□□□□□ -1.43
CDC48YDL126C BIO2P32451 375 aa6.08□□□□□ -1.44
CDC48YDL126C TIF1P10081 395 aaKnown RBP6.08□□□□□ -1.44
CDC48YDL126C MRX12P47084 519 aa6.08□□□□□ -1.44
CDC48YDL126C GEA2P39993 1459 aaKnown RBP6.07□□□□□ -1.44
CDC48YDL126C IRC20Q06554 1556 aa6.07□□□□□ -1.44
CDC48YDL126C SSA2P10592 639 aaKnown RBP6.07□□□□□ -1.44
CDC48YDL126C PIB1Q06651 286 aa6.07□□□□□ -1.44
CDC48YDL126C NUP170P38181 1502 aa6.07□□□□□ -1.44
CDC48YDL126C TYW1Q08960 810 aaKnown RBP6.06□□□□□ -1.44
CDC48YDL126C BRL1P38770 471 aa6.06□□□□□ -1.44
CDC48YDL126C NUP159P40477 1460 aa6.06□□□□□ -1.44
CDC48YDL126C TY3B-GQ99315 1547 aa6.06□□□□□ -1.44
CDC48YDL126C MST1P07236 462 aa6.05□□□□□ -1.44
CDC48YDL126C YGL015CP33199 130 aa6.05□□□□□ -1.44
CDC48YDL126C YJL007CP47080 104 aa6.05□□□□□ -1.44
CDC48YDL126C SNU71P53207 620 aaKnown RBP6.05□□□□□ -1.44
CDC48YDL126C IKI3Q06706 1349 aaKnown RBP6.05□□□□□ -1.44
CDC48YDL126C YBT1P32386 1661 aa6.05□□□□□ -1.44
CDC48YDL126C NIS1P53939 407 aa6.05□□□□□ -1.44
CDC48YDL126C TTI1P36097 1038 aa6.04□□□□□ -1.44
CDC48YDL126C MVP1P40959 511 aaKnown RBP6.04□□□□□ -1.44
CDC48YDL126C YFR016CP43597 1233 aaKnown RBP6.04□□□□□ -1.44
CDC48YDL126C GRE2Q12068 342 aaKnown RBP6.04□□□□□ -1.44
CDC48YDL126C TOP1P04786 769 aa6.03□□□□□ -1.44
CDC48YDL126C SUP45P12385 437 aaKnown RBP6.03□□□□□ -1.44
CDC48YDL126C SIS2P36024 562 aa6.03□□□□□ -1.44
CDC48YDL126C SEN54Q02825 467 aaPredicted RBP6.03□□□□□ -1.44
CDC48YDL126C YAP5P40574 245 aa6.03□□□□□ -1.44
CDC48YDL126C LAM6Q08001 693 aa6.02□□□□□ -1.45
CDC48YDL126C MET5P47169 1442 aa6.02□□□□□ -1.45
CDC48YDL126C SWE1P32944 819 aa6.02□□□□□ -1.45
CDC48YDL126C RSC30P38781 883 aa6.02□□□□□ -1.45
CDC48YDL126C RAD54P32863 898 aa6.01□□□□□ -1.45
CDC48YDL126C ATH1P48016 1211 aa6.01□□□□□ -1.45
CDC48YDL126C HST2P53686 357 aa6.01□□□□□ -1.45
CDC48YDL126C YRF1-1P0CX20 1796 aa6.01□□□□□ -1.45
CDC48YDL126C YRF1-5P0CX21 1796 aa6.01□□□□□ -1.45
CDC48YDL126C YRF1-8P0CX22 1796 aa6.01□□□□□ -1.45
CDC48YDL126C CAT8P39113 1433 aa6.01□□□□□ -1.45
CDC48YDL126C RTT106P40161 455 aa6.01□□□□□ -1.45
CDC48YDL126C TEA1P47988 759 aa6.01□□□□□ -1.45
CDC48YDL126C VPS15P22219 1454 aa6.01□□□□□ -1.45
CDC48YDL126C SIT4P20604 311 aa6□□□□□ -1.45
CDC48YDL126C EBP2P36049 427 aaKnown RBP6□□□□□ -1.45
CDC48YDL126C CAB3P36076 571 aa6□□□□□ -1.45
CDC48YDL126C TGL3P40308 642 aa6□□□□□ -1.45
CDC48YDL126C FPK1P53739 893 aa6□□□□□ -1.45
CDC48YDL126C MRX10Q05648 414 aa6□□□□□ -1.45
CDC48YDL126C PDR12Q02785 1511 aa5.99□□□□□ -1.45
CDC48YDL126C CPS1P27614 576 aa5.99□□□□□ -1.45
CDC48YDL126C SPO14P36126 1683 aa5.99□□□□□ -1.45
CDC48YDL126C PUP1P25043 261 aa5.99□□□□□ -1.45
CDC48YDL126C GDB1Q06625 1536 aa5.99□□□□□ -1.45
CDC48YDL126C AI4P03878 556 aa5.98□□□□□ -1.45
CDC48YDL126C MPH3P0CE00 602 aa5.98□□□□□ -1.45
CDC48YDL126C SSA4P22202 642 aaKnown RBP5.98□□□□□ -1.45
CDC48YDL126C YML083CQ04526 418 aa5.98□□□□□ -1.45
CDC48YDL126C SCJ1P25303 377 aa5.97□□□□□ -1.45
CDC48YDL126C PAM1P37304 830 aaKnown RBP5.97□□□□□ -1.45
CDC48YDL126C SSM4P40318 1319 aa5.97□□□□□ -1.45
CDC48YDL126C PDR10P51533 1564 aa5.96□□□□□ -1.45
CDC48YDL126C RAD59Q12223 238 aa5.96□□□□□ -1.45
CDC48YDL126C ARO1P08566 1588 aaKnown RBP5.96□□□□□ -1.46
CDC48YDL126C YJU3P28321 313 aa5.96□□□□□ -1.46
Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms