RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 RAPGEF6Q8TEU7 1601 aa27.29■■□□□ 1.96
PHGDH-234ENST00000642041 STRCQ7RTU9 1775 aa27.28■■□□□ 1.96
PHGDH-234ENST00000642041 CFAP74Q9C0B2 1584 aa27.26■■□□□ 1.96
PHGDH-234ENST00000642041 ARHGEF12Q9NZN5 1544 aa27.22■■□□□ 1.95
PHGDH-234ENST00000642041 PLEKHD1A6NEE1 506 aa27.22■■□□□ 1.95
PHGDH-234ENST00000642041 NUP153P49790 1475 aaKnown RBP27.21■■□□□ 1.95
PHGDH-234ENST00000642041 CEBPAP49715 358 aaPredicted RBP27.2■■□□□ 1.94
PHGDH-234ENST00000642041 SETD1BQ9UPS6 1966 aaKnown RBP27.19■■□□□ 1.94
PHGDH-234ENST00000642041 PTPRTO14522 1441 aa27.19■■□□□ 1.94
PHGDH-234ENST00000642041 HECW1Q76N89 1606 aa27.19■■□□□ 1.94
PHGDH-234ENST00000642041 SAMD9Q5K651 1589 aa27.18■■□□□ 1.94
PHGDH-234ENST00000642041 UHRF1BP1Q6BDS2 1440 aa27.17■■□□□ 1.94
PHGDH-234ENST00000642041 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.16■■□□□ 1.946e-6■■■■■ 38.2
PHGDH-234ENST00000642041 ATP10AO60312 1499 aa27.14■■□□□ 1.94
PHGDH-234ENST00000642041 IQSEC2Q5JU85 1478 aa27.14■■□□□ 1.94
PHGDH-234ENST00000642041 LTBP4Q8N2S1 1624 aa27.12■■□□□ 1.93
PHGDH-234ENST00000642041 C9orf84Q5VXU9 1444 aa27.11■■□□□ 1.93
PHGDH-234ENST00000642041 SCAPERQ9BY12 1400 aa27.1■■□□□ 1.93
PHGDH-234ENST00000642041 UBTFP17480 764 aaKnown RBP27.07■■□□□ 1.92
PHGDH-234ENST00000642041 EHMT2Q96KQ7 1210 aa27.05■■□□□ 1.92
PHGDH-234ENST00000642041 PLCH2O75038 1416 aa27.01■■□□□ 1.91
PHGDH-234ENST00000642041 NCOA1Q15788 1441 aa26.94■■□□□ 1.9
PHGDH-234ENST00000642041 EFCAB2Q5VUJ9 269 aa26.93■■□□□ 1.9
PHGDH-234ENST00000642041 TRAPPC8Q9Y2L5 1435 aa26.91■■□□□ 1.9
PHGDH-234ENST00000642041 UBAP1LF5GYI3 381 aa26.91■■□□□ 1.9
PHGDH-234ENST00000642041 C3P01024 1663 aa26.9■■□□□ 1.9
PHGDH-234ENST00000642041 CEP162Q5TB80 1403 aa26.9■■□□□ 1.9
PHGDH-234ENST00000642041 ZNF518AQ6AHZ1 1483 aa26.87■■□□□ 1.89
PHGDH-234ENST00000642041 RANGAP1P46060 587 aaPredicted RBP26.87■■□□□ 1.89
PHGDH-234ENST00000642041 ESF1Q9H501 851 aaKnown RBP26.85■■□□□ 1.89
PHGDH-234ENST00000642041 AFAP1Q8N556 730 aa26.84■■□□□ 1.89
PHGDH-234ENST00000642041 REREQ9P2R6 1566 aa26.84■■□□□ 1.89
PHGDH-234ENST00000642041 KDM5CP41229 1560 aa26.83■■□□□ 1.89
PHGDH-234ENST00000642041 CDK13Q14004 1512 aaKnown RBP26.81■■□□□ 1.88
PHGDH-234ENST00000642041 MYT1LQ9UL68 1186 aa26.81■■□□□ 1.88
PHGDH-234ENST00000642041 ZNF335Q9H4Z2 1342 aaPredicted RBP26.81■■□□□ 1.88
PHGDH-234ENST00000642041 DIP2CQ9Y2E4 1556 aa26.8■■□□□ 1.88
PHGDH-234ENST00000642041 MYO5CQ9NQX4 1742 aa26.79■■□□□ 1.88
PHGDH-234ENST00000642041 CLIP1P30622 1438 aa26.79■■□□□ 1.88
PHGDH-234ENST00000642041 CAMSAP1Q5T5Y3 1602 aa26.79■■□□□ 1.88
PHGDH-234ENST00000642041 AGLP35573 1532 aa26.78■■□□□ 1.88
PHGDH-234ENST00000642041 CNTLNQ9NXG0 1405 aa26.75■■□□□ 1.87
PHGDH-234ENST00000642041 NCKAP5LQ9HCH0 1330 aa26.74■■□□□ 1.87
PHGDH-234ENST00000642041 MLH3Q9UHC1 1453 aa26.74■■□□□ 1.87
PHGDH-234ENST00000642041 MED1Q15648 1581 aaPredicted RBP26.73■■□□□ 1.87
PHGDH-234ENST00000642041 NPATQ14207 1427 aa26.72■■□□□ 1.87
PHGDH-234ENST00000642041 ABCA6Q8N139 1617 aa26.72■■□□□ 1.87
PHGDH-234ENST00000642041 HSPA1LP34931 641 aa26.69■■□□□ 1.86
PHGDH-234ENST00000642041 PKD2Q13563 968 aa26.69■■□□□ 1.86
PHGDH-234ENST00000642041 ARHGAP5Q13017 1502 aa26.69■■□□□ 1.86
PHGDH-234ENST00000642041 CDK11AQ9UQ88 783 aaPredicted RBP26.68■■□□□ 1.86
PHGDH-234ENST00000642041 ARHGAP35Q9NRY4 1499 aa26.66■■□□□ 1.86
PHGDH-234ENST00000642041 PLA2R1Q13018 1463 aa26.64■■□□□ 1.86
PHGDH-234ENST00000642041 TRIM26Q12899 539 aaPredicted RBP26.63■■□□□ 1.85
PHGDH-234ENST00000642041 KIF14Q15058 1648 aa26.63■■□□□ 1.85
PHGDH-234ENST00000642041 ZMYM3Q14202 1370 aa26.61■■□□□ 1.85
PHGDH-234ENST00000642041 MROH2AA6NES4 1674 aa26.6■■□□□ 1.85
PHGDH-234ENST00000642041 ATP1B4Q9UN42 357 aaPredicted RBP26.6■■□□□ 1.85
PHGDH-234ENST00000642041 TCOF1Q13428 1488 aaKnown RBP26.6■■□□□ 1.85
PHGDH-234ENST00000642041 SCAF1Q9H7N4 1312 aaKnown RBP26.6■■□□□ 1.85
PHGDH-234ENST00000642041 TROQ12816 1431 aaPredicted RBP26.58■■□□□ 1.85
PHGDH-234ENST00000642041 TOM1O60784 492 aa26.58■■□□□ 1.85
PHGDH-234ENST00000642041 PIP4K2BP78356 416 aa26.57■■□□□ 1.84
PHGDH-234ENST00000642041 PHF23Q9BUL5 403 aaPredicted RBP26.57■■□□□ 1.84
PHGDH-234ENST00000642041 PPP6R1Q9UPN7 881 aa26.57■■□□□ 1.84
PHGDH-234ENST00000642041 VPS8Q8N3P4 1428 aa26.56■■□□□ 1.84
PHGDH-234ENST00000642041 ZNF142P52746 1687 aaPredicted RBP26.54■■□□□ 1.84
PHGDH-234ENST00000642041 CDC42BPBQ9Y5S2 1711 aa26.53■■□□□ 1.84
PHGDH-234ENST00000642041 KIDINS220Q9ULH0 1771 aa26.53■■□□□ 1.84
PHGDH-234ENST00000642041 APLP2Q06481 763 aa26.53■■□□□ 1.84
PHGDH-234ENST00000642041 FMN1Q68DA7 1419 aa26.52■■□□□ 1.84
PHGDH-234ENST00000642041 ABCC1P33527 1531 aa26.51■■□□□ 1.83
PHGDH-234ENST00000642041 MYO3AQ8NEV4 1616 aa26.5■■□□□ 1.83
PHGDH-234ENST00000642041 SUPT6HQ7KZ85 1726 aaKnown RBP26.5■■□□□ 1.83
PHGDH-234ENST00000642041 CEP170BQ9Y4F5 1589 aaPredicted RBP26.5■■□□□ 1.83
PHGDH-234ENST00000642041 ITSN2Q9NZM3 1697 aa26.48■■□□□ 1.83
PHGDH-234ENST00000642041 PTPRKQ15262 1439 aa26.46■■□□□ 1.83
PHGDH-234ENST00000642041 CPS1P31327 1500 aa26.45■■□□□ 1.83
PHGDH-234ENST00000642041 PREX2Q70Z35 1606 aa26.43■■□□□ 1.82
PHGDH-234ENST00000642041 CLTCQ00610 1675 aaKnown RBP26.41■■□□□ 1.82
PHGDH-234ENST00000642041 SHANK2Q9UPX8 1470 aa26.4■■□□□ 1.82
PHGDH-234ENST00000642041 SAMD9LQ8IVG5 1584 aa26.37■■□□□ 1.81
PHGDH-234ENST00000642041 A2ML1A8K2U0 1454 aa26.36■■□□□ 1.81
PHGDH-234ENST00000642041 FYCO1Q9BQS8 1478 aa26.36■■□□□ 1.81
PHGDH-234ENST00000642041 SPAG9O60271 1321 aaKnown RBP26.35■■□□□ 1.81
PHGDH-234ENST00000642041 DNMT1P26358 1616 aaKnown RBP26.34■■□□□ 1.81
PHGDH-234ENST00000642041 CASKIN1Q8WXD9 1431 aa26.33■■□□□ 1.81
PHGDH-234ENST00000642041 GGT6Q6P531 493 aa26.32■■□□□ 1.8
PHGDH-234ENST00000642041 PCGF6Q9BYE7 350 aa26.32■■□□□ 1.8
PHGDH-234ENST00000642041 ALKQ9UM73 1620 aa26.32■■□□□ 1.8
PHGDH-234ENST00000642041 LRRIQ1Q96JM4 1722 aa26.31■■□□□ 1.8
PHGDH-234ENST00000642041 PLXNC1O60486 1568 aa26.29■■□□□ 1.8
PHGDH-234ENST00000642041 NEURL4Q96JN8 1562 aa26.29■■□□□ 1.8
PHGDH-234ENST00000642041 MAP3K1Q13233 1512 aa26.29■■□□□ 1.8
PHGDH-234ENST00000642041 POLR1AO95602 1720 aaPredicted RBP26.28■■□□□ 1.8
PHGDH-234ENST00000642041 A2MP01023 1474 aa26.28■■□□□ 1.8
PHGDH-234ENST00000642041 CDC42BPAQ5VT25 1732 aa26.28■■□□□ 1.8
PHGDH-234ENST00000642041 RGS17Q9UGC6 210 aaPredicted RBP26.27■■□□□ 1.8
PHGDH-234ENST00000642041 ZNF777Q9ULD5 760 aaPredicted RBP26.26■■□□□ 1.79
PHGDH-234ENST00000642041 ATP7AQ04656 1500 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms