RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PREX1Q8TCU6 1659 aa27.91■■■□□ 2.06
CLN3-264ENST00000637985 HECW1Q76N89 1606 aa27.9■■■□□ 2.06
CLN3-264ENST00000637985 ARHGEF12Q9NZN5 1544 aa27.9■■■□□ 2.06
CLN3-264ENST00000637985 STRCQ7RTU9 1775 aa27.89■■■□□ 2.06
CLN3-264ENST00000637985 SPATA31D1Q6ZQQ2 1576 aa27.86■■■□□ 2.05
CLN3-264ENST00000637985 CEBPAP49715 358 aaPredicted RBP27.84■■■□□ 2.05
CLN3-264ENST00000637985 ATP10AO60312 1499 aa27.83■■■□□ 2.04
CLN3-264ENST00000637985 SCAPERQ9BY12 1400 aa27.82■■■□□ 2.04
CLN3-264ENST00000637985 C9orf84Q5VXU9 1444 aa27.79■■■□□ 2.04
CLN3-264ENST00000637985 SETD1BQ9UPS6 1966 aaKnown RBP27.77■■■□□ 2.04
CLN3-264ENST00000637985 PLCH2O75038 1416 aa27.76■■■□□ 2.04
CLN3-264ENST00000637985 UHRF1BP1Q6BDS2 1440 aa27.75■■■□□ 2.03
CLN3-264ENST00000637985 CSRNP3Q8WYN3 585 aa27.75■■■□□ 2.03
CLN3-264ENST00000637985 PTPRTO14522 1441 aa27.75■■■□□ 2.03
CLN3-264ENST00000637985 RANGAP1P46060 587 aaPredicted RBP27.72■■■□□ 2.03
CLN3-264ENST00000637985 LTBP4Q8N2S1 1624 aa27.69■■■□□ 2.02
CLN3-264ENST00000637985 IQSEC2Q5JU85 1478 aa27.66■■■□□ 2.02
CLN3-264ENST00000637985 EFCAB2Q5VUJ9 269 aa27.65■■■□□ 2.02
CLN3-264ENST00000637985 CDK13Q14004 1512 aaKnown RBP27.64■■■□□ 2.02
CLN3-264ENST00000637985 ZNF518AQ6AHZ1 1483 aa27.6■■■□□ 2.01
CLN3-264ENST00000637985 KDM5CP41229 1560 aa27.58■■■□□ 2.01
CLN3-264ENST00000637985 C3P01024 1663 aa27.58■■■□□ 2.01
CLN3-264ENST00000637985 MYO5CQ9NQX4 1742 aa27.58■■■□□ 2.01
CLN3-264ENST00000637985 AFAP1Q8N556 730 aa27.57■■■□□ 2
CLN3-264ENST00000637985 REREQ9P2R6 1566 aa27.56■■■□□ 2
CLN3-264ENST00000637985 NCOA1Q15788 1441 aa27.54■■■□□ 2
CLN3-264ENST00000637985 DIP2CQ9Y2E4 1556 aa27.54■■■□□ 2
CLN3-264ENST00000637985 TRAPPC8Q9Y2L5 1435 aa27.54■■■□□ 2
CLN3-264ENST00000637985 AGLP35573 1532 aa27.47■■□□□ 1.99
CLN3-264ENST00000637985 MYT1LQ9UL68 1186 aa27.47■■□□□ 1.99
CLN3-264ENST00000637985 MLH3Q9UHC1 1453 aa27.46■■□□□ 1.99
CLN3-264ENST00000637985 KIF14Q15058 1648 aa27.46■■□□□ 1.99
CLN3-264ENST00000637985 ESF1Q9H501 851 aaKnown RBP27.46■■□□□ 1.99
CLN3-264ENST00000637985 ARHGAP5Q13017 1502 aa27.46■■□□□ 1.99
CLN3-264ENST00000637985 ABCA6Q8N139 1617 aa27.45■■□□□ 1.99
CLN3-264ENST00000637985 EEA1Q15075 1411 aa27.45■■□□□ 1.98
CLN3-264ENST00000637985 CDK11AQ9UQ88 783 aaPredicted RBP27.44■■□□□ 1.98
CLN3-264ENST00000637985 UBAP1LF5GYI3 381 aa27.41■■□□□ 1.98
CLN3-264ENST00000637985 CAMSAP1Q5T5Y3 1602 aa27.41■■□□□ 1.98
CLN3-264ENST00000637985 CNTLNQ9NXG0 1405 aa27.41■■□□□ 1.98
CLN3-264ENST00000637985 ATP1B4Q9UN42 357 aaPredicted RBP27.39■■□□□ 1.98
CLN3-264ENST00000637985 TROQ12816 1431 aaPredicted RBP27.39■■□□□ 1.97
CLN3-264ENST00000637985 ZNF335Q9H4Z2 1342 aaPredicted RBP27.38■■□□□ 1.97
CLN3-264ENST00000637985 NPATQ14207 1427 aa27.36■■□□□ 1.97
CLN3-264ENST00000637985 FMN1Q68DA7 1419 aa27.36■■□□□ 1.97
CLN3-264ENST00000637985 NCKAP5LQ9HCH0 1330 aa27.35■■□□□ 1.97
CLN3-264ENST00000637985 CDC42BPBQ9Y5S2 1711 aa27.34■■□□□ 1.97
CLN3-264ENST00000637985 CLIP1P30622 1438 aa27.31■■□□□ 1.96
CLN3-264ENST00000637985 ABCC1P33527 1531 aa27.3■■□□□ 1.96
CLN3-264ENST00000637985 MROH2AA6NES4 1674 aa27.3■■□□□ 1.96
CLN3-264ENST00000637985 KIDINS220Q9ULH0 1771 aa27.3■■□□□ 1.96
CLN3-264ENST00000637985 ZMYM3Q14202 1370 aa27.29■■□□□ 1.96
CLN3-264ENST00000637985 PKD2Q13563 968 aa27.27■■□□□ 1.96
CLN3-264ENST00000637985 ITSN2Q9NZM3 1697 aa27.26■■□□□ 1.95
CLN3-264ENST00000637985 PLA2R1Q13018 1463 aa27.25■■□□□ 1.95
CLN3-264ENST00000637985 PREX2Q70Z35 1606 aa27.23■■□□□ 1.95
CLN3-264ENST00000637985 TCOF1Q13428 1488 aaKnown RBP27.23■■□□□ 1.95
CLN3-264ENST00000637985 ARHGAP35Q9NRY4 1499 aa27.23■■□□□ 1.95
CLN3-264ENST00000637985 MED1Q15648 1581 aaPredicted RBP27.21■■□□□ 1.95
CLN3-264ENST00000637985 ZNF142P52746 1687 aaPredicted RBP27.21■■□□□ 1.95
CLN3-264ENST00000637985 LRRIQ1Q96JM4 1722 aa27.2■■□□□ 1.94
CLN3-264ENST00000637985 HSPA1LP34931 641 aa27.19■■□□□ 1.94
CLN3-264ENST00000637985 MYO3AQ8NEV4 1616 aa27.18■■□□□ 1.94
CLN3-264ENST00000637985 CEP170BQ9Y4F5 1589 aaPredicted RBP27.16■■□□□ 1.94
CLN3-264ENST00000637985 SAMD9LQ8IVG5 1584 aa27.15■■□□□ 1.94
CLN3-264ENST00000637985 PPP6R1Q9UPN7 881 aa27.15■■□□□ 1.94
CLN3-264ENST00000637985 PTPRKQ15262 1439 aa27.15■■□□□ 1.94
CLN3-264ENST00000637985 SUPT6HQ7KZ85 1726 aaKnown RBP27.14■■□□□ 1.94
CLN3-264ENST00000637985 CLTCQ00610 1675 aaKnown RBP27.13■■□□□ 1.93
CLN3-264ENST00000637985 UBTFP17480 764 aaKnown RBP27.12■■□□□ 1.93
CLN3-264ENST00000637985 PIP4K2BP78356 416 aa27.1■■□□□ 1.93
CLN3-264ENST00000637985 SCAF1Q9H7N4 1312 aaKnown RBP27.1■■□□□ 1.93
CLN3-264ENST00000637985 CDC42BPAQ5VT25 1732 aa27.1■■□□□ 1.93
CLN3-264ENST00000637985 TOM1O60784 492 aa27.09■■□□□ 1.93
CLN3-264ENST00000637985 SPAG9O60271 1321 aaKnown RBP27.08■■□□□ 1.93
CLN3-264ENST00000637985 PLXNC1O60486 1568 aa27.05■■□□□ 1.92
CLN3-264ENST00000637985 EHMT2Q96KQ7 1210 aa27.04■■□□□ 1.92
CLN3-264ENST00000637985 CPS1P31327 1500 aa27.04■■□□□ 1.92
CLN3-264ENST00000637985 ZNF777Q9ULD5 760 aaPredicted RBP27.03■■□□□ 1.92
CLN3-264ENST00000637985 SYCP2Q9BX26 1530 aa27.02■■□□□ 1.92
CLN3-264ENST00000637985 CCDC18Q5T9S5 1454 aa27.02■■□□□ 1.92
CLN3-264ENST00000637985 ATP7AQ04656 1500 aa27.01■■□□□ 1.91
CLN3-264ENST00000637985 A2ML1A8K2U0 1454 aa27.01■■□□□ 1.91
CLN3-264ENST00000637985 A2MP01023 1474 aa27.01■■□□□ 1.91
CLN3-264ENST00000637985 HNRNPMP52272 730 aaKnown RBP eCLIP27.01■■□□□ 1.91
CLN3-264ENST00000637985 DNMT1P26358 1616 aaKnown RBP27.01■■□□□ 1.91
CLN3-264ENST00000637985 GGT6Q6P531 493 aa27■■□□□ 1.91
CLN3-264ENST00000637985 SHANK2Q9UPX8 1470 aa27■■□□□ 1.91
CLN3-264ENST00000637985 PHF23Q9BUL5 403 aaPredicted RBP26.99■■□□□ 1.91
CLN3-264ENST00000637985 CASKIN1Q8WXD9 1431 aa26.99■■□□□ 1.91
CLN3-264ENST00000637985 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
CLN3-264ENST00000637985 GPATCH8Q9UKJ3 1502 aaKnown RBP26.96■■□□□ 1.91
CLN3-264ENST00000637985 KIAA1107Q9UPP5 1409 aa26.96■■□□□ 1.91
CLN3-264ENST00000637985 NEURL4Q96JN8 1562 aa26.96■■□□□ 1.91
CLN3-264ENST00000637985 POLR1AO95602 1720 aaPredicted RBP26.94■■□□□ 1.9
CLN3-264ENST00000637985 ALKQ9UM73 1620 aa26.92■■□□□ 1.9
CLN3-264ENST00000637985 PLEKHH2Q8IVE3 1493 aa26.9■■□□□ 1.9
CLN3-264ENST00000637985 VWDEQ8N2E2 1590 aa26.88■■□□□ 1.89
CLN3-264ENST00000637985 ADGBQ8N7X0 1667 aa26.86■■□□□ 1.89
CLN3-264ENST00000637985 CFDP1Q9UEE9 299 aaPredicted RBP26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms