RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MAGI2Q86UL8 1455 aa25.02■■□□□ 1.6
CLN3-249ENST00000636685 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.02■■□□□ 1.6
CLN3-249ENST00000636685 PLEKHD1A6NEE1 506 aa25.01■■□□□ 1.59
CLN3-249ENST00000636685 CEBPAP49715 358 aaPredicted RBP25.01■■□□□ 1.59
CLN3-249ENST00000636685 ARHGEF12Q9NZN5 1544 aa25.01■■□□□ 1.59
CLN3-249ENST00000636685 DMRT2Q9Y5R5 561 aa24.99■■□□□ 1.59
CLN3-249ENST00000636685 ATP10AO60312 1499 aa24.93■■□□□ 1.58
CLN3-249ENST00000636685 SCAPERQ9BY12 1400 aa24.93■■□□□ 1.58
CLN3-249ENST00000636685 SETD1BQ9UPS6 1966 aaKnown RBP24.93■■□□□ 1.58
CLN3-249ENST00000636685 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
CLN3-249ENST00000636685 C9orf84Q5VXU9 1444 aa24.9■■□□□ 1.58
CLN3-249ENST00000636685 UHRF1BP1Q6BDS2 1440 aa24.9■■□□□ 1.58
CLN3-249ENST00000636685 PTPRTO14522 1441 aa24.86■■□□□ 1.57
CLN3-249ENST00000636685 LTBP4Q8N2S1 1624 aa24.85■■□□□ 1.57
CLN3-249ENST00000636685 PLCH2O75038 1416 aa24.83■■□□□ 1.57
CLN3-249ENST00000636685 CDK13Q14004 1512 aaKnown RBP24.8■■□□□ 1.56
CLN3-249ENST00000636685 C3P01024 1663 aa24.78■■□□□ 1.56
CLN3-249ENST00000636685 IQSEC2Q5JU85 1478 aa24.77■■□□□ 1.56
CLN3-249ENST00000636685 CSRNP3Q8WYN3 585 aa24.77■■□□□ 1.56
CLN3-249ENST00000636685 MYO5CQ9NQX4 1742 aa24.75■■□□□ 1.55
CLN3-249ENST00000636685 EFCAB2Q5VUJ9 269 aa24.73■■□□□ 1.55
CLN3-249ENST00000636685 AFAP1Q8N556 730 aa24.7■■□□□ 1.54
CLN3-249ENST00000636685 DIP2CQ9Y2E4 1556 aa24.7■■□□□ 1.54
CLN3-249ENST00000636685 ZNF518AQ6AHZ1 1483 aa24.7■■□□□ 1.54
CLN3-249ENST00000636685 NCOA1Q15788 1441 aa24.69■■□□□ 1.54
CLN3-249ENST00000636685 KDM5CP41229 1560 aa24.69■■□□□ 1.54
CLN3-249ENST00000636685 MYT1LQ9UL68 1186 aa24.68■■□□□ 1.54
CLN3-249ENST00000636685 TRAPPC8Q9Y2L5 1435 aa24.66■■□□□ 1.54
CLN3-249ENST00000636685 REREQ9P2R6 1566 aa24.65■■□□□ 1.54
CLN3-249ENST00000636685 ABCA6Q8N139 1617 aa24.64■■□□□ 1.54
CLN3-249ENST00000636685 UBAP1LF5GYI3 381 aa24.64■■□□□ 1.54
CLN3-249ENST00000636685 KIF14Q15058 1648 aa24.64■■□□□ 1.53
CLN3-249ENST00000636685 ESF1Q9H501 851 aaKnown RBP24.62■■□□□ 1.53
CLN3-249ENST00000636685 ARHGAP5Q13017 1502 aa24.61■■□□□ 1.53
CLN3-249ENST00000636685 CAMSAP1Q5T5Y3 1602 aa24.61■■□□□ 1.53
CLN3-249ENST00000636685 ZNF335Q9H4Z2 1342 aaPredicted RBP24.6■■□□□ 1.53
CLN3-249ENST00000636685 ATP1B4Q9UN42 357 aaPredicted RBP24.58■■□□□ 1.53
CLN3-249ENST00000636685 AGLP35573 1532 aa24.57■■□□□ 1.52
CLN3-249ENST00000636685 NCKAP5LQ9HCH0 1330 aa24.57■■□□□ 1.52
CLN3-249ENST00000636685 MLH3Q9UHC1 1453 aa24.56■■□□□ 1.52
CLN3-249ENST00000636685 CNTLNQ9NXG0 1405 aa24.52■■□□□ 1.52
CLN3-249ENST00000636685 CDC42BPBQ9Y5S2 1711 aa24.52■■□□□ 1.52
CLN3-249ENST00000636685 CDK11AQ9UQ88 783 aaPredicted RBP24.5■■□□□ 1.51
CLN3-249ENST00000636685 MED1Q15648 1581 aaPredicted RBP24.5■■□□□ 1.51
CLN3-249ENST00000636685 TROQ12816 1431 aaPredicted RBP24.49■■□□□ 1.51
CLN3-249ENST00000636685 NPATQ14207 1427 aa24.48■■□□□ 1.51
CLN3-249ENST00000636685 KIDINS220Q9ULH0 1771 aa24.48■■□□□ 1.51
CLN3-249ENST00000636685 MROH2AA6NES4 1674 aa24.47■■□□□ 1.51
CLN3-249ENST00000636685 ITSN2Q9NZM3 1697 aa24.46■■□□□ 1.51
CLN3-249ENST00000636685 EEA1Q15075 1411 aa24.45■■□□□ 1.51
CLN3-249ENST00000636685 SUPT6HQ7KZ85 1726 aaKnown RBP24.45■■□□□ 1.5
CLN3-249ENST00000636685 ABCC1P33527 1531 aa24.45■■□□□ 1.5
CLN3-249ENST00000636685 HSPA1LP34931 641 aa24.44■■□□□ 1.5
CLN3-249ENST00000636685 ZMYM3Q14202 1370 aa24.43■■□□□ 1.5
CLN3-249ENST00000636685 CLIP1P30622 1438 aa24.43■■□□□ 1.5
CLN3-249ENST00000636685 FMN1Q68DA7 1419 aa24.43■■□□□ 1.5
CLN3-249ENST00000636685 LRRIQ1Q96JM4 1722 aa24.42■■□□□ 1.5
CLN3-249ENST00000636685 SCAF1Q9H7N4 1312 aaKnown RBP24.41■■□□□ 1.5
CLN3-249ENST00000636685 ZNF142P52746 1687 aaPredicted RBP24.41■■□□□ 1.5
CLN3-249ENST00000636685 PKD2Q13563 968 aa24.41■■□□□ 1.5
CLN3-249ENST00000636685 PREX2Q70Z35 1606 aa24.41■■□□□ 1.5
CLN3-249ENST00000636685 MYO3AQ8NEV4 1616 aa24.41■■□□□ 1.5
CLN3-249ENST00000636685 PLA2R1Q13018 1463 aa24.4■■□□□ 1.5
CLN3-249ENST00000636685 TCOF1Q13428 1488 aaKnown RBP24.39■■□□□ 1.5
CLN3-249ENST00000636685 CLTCQ00610 1675 aaKnown RBP24.38■■□□□ 1.49
CLN3-249ENST00000636685 PIP4K2BP78356 416 aa24.38■■□□□ 1.49
CLN3-249ENST00000636685 CEP170BQ9Y4F5 1589 aaPredicted RBP24.37■■□□□ 1.49
CLN3-249ENST00000636685 ARHGAP35Q9NRY4 1499 aa24.35■■□□□ 1.49
CLN3-249ENST00000636685 PPP6R1Q9UPN7 881 aa24.35■■□□□ 1.49
CLN3-249ENST00000636685 SAMD9LQ8IVG5 1584 aa24.33■■□□□ 1.48
CLN3-249ENST00000636685 EHMT2Q96KQ7 1210 aa24.32■■□□□ 1.48
CLN3-249ENST00000636685 PTPRKQ15262 1439 aa24.31■■□□□ 1.48
CLN3-249ENST00000636685 CDC42BPAQ5VT25 1732 aa24.31■■□□□ 1.48
CLN3-249ENST00000636685 TOM1O60784 492 aa24.29■■□□□ 1.48
CLN3-249ENST00000636685 PHF23Q9BUL5 403 aaPredicted RBP24.29■■□□□ 1.48
CLN3-249ENST00000636685 UBTFP17480 764 aaKnown RBP24.26■■□□□ 1.47
CLN3-249ENST00000636685 ZNF777Q9ULD5 760 aaPredicted RBP24.24■■□□□ 1.47
CLN3-249ENST00000636685 SPAG9O60271 1321 aaKnown RBP24.24■■□□□ 1.47
CLN3-249ENST00000636685 CPS1P31327 1500 aa24.23■■□□□ 1.47
CLN3-249ENST00000636685 SYCP2Q9BX26 1530 aa24.23■■□□□ 1.47
CLN3-249ENST00000636685 DNMT1P26358 1616 aaKnown RBP24.23■■□□□ 1.47
CLN3-249ENST00000636685 POLR1AO95602 1720 aaPredicted RBP24.22■■□□□ 1.47
CLN3-249ENST00000636685 PLXNC1O60486 1568 aa24.22■■□□□ 1.47
CLN3-249ENST00000636685 SHANK2Q9UPX8 1470 aa24.21■■□□□ 1.47
CLN3-249ENST00000636685 GGT6Q6P531 493 aa24.21■■□□□ 1.47
CLN3-249ENST00000636685 ATP7AQ04656 1500 aa24.2■■□□□ 1.47
CLN3-249ENST00000636685 A2ML1A8K2U0 1454 aa24.2■■□□□ 1.47
CLN3-249ENST00000636685 HNRNPMP52272 730 aaKnown RBP eCLIP24.2■■□□□ 1.46
CLN3-249ENST00000636685 NEURL4Q96JN8 1562 aa24.2■■□□□ 1.46
CLN3-249ENST00000636685 A2MP01023 1474 aa24.19■■□□□ 1.46
CLN3-249ENST00000636685 ALKQ9UM73 1620 aa24.17■■□□□ 1.46
CLN3-249ENST00000636685 INO80Q9ULG1 1556 aaPredicted RBP24.16■■□□□ 1.46
CLN3-249ENST00000636685 SENP3Q9H4L4 574 aaPredicted RBP24.15■■□□□ 1.46
CLN3-249ENST00000636685 CCDC18Q5T9S5 1454 aa24.14■■□□□ 1.46
CLN3-249ENST00000636685 VWDEQ8N2E2 1590 aa24.12■■□□□ 1.45
CLN3-249ENST00000636685 GPATCH8Q9UKJ3 1502 aaKnown RBP24.1■■□□□ 1.45
CLN3-249ENST00000636685 CASKIN1Q8WXD9 1431 aa24.1■■□□□ 1.45
CLN3-249ENST00000636685 ADGBQ8N7X0 1667 aa24.08■■□□□ 1.45
CLN3-249ENST00000636685 TNRQ92752 1358 aa24.06■■□□□ 1.44
CLN3-249ENST00000636685 FBXO31Q5XUX0 539 aaPredicted RBP24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms