RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 EFCAB2Q5VUJ9 269 aa12.32□□□□□ -0.44
CIITA-214ENST00000636238 HECW1Q76N89 1606 aa12.31□□□□□ -0.44
CIITA-214ENST00000636238 CDK11AQ9UQ88 783 aaPredicted RBP12.31□□□□□ -0.44
CIITA-214ENST00000636238 SOCS7O14512 581 aa12.3□□□□□ -0.44
CIITA-214ENST00000636238 PTPRTO14522 1441 aa12.29□□□□□ -0.44
CIITA-214ENST00000636238 UHRF1BP1Q6BDS2 1440 aa12.29□□□□□ -0.44
CIITA-214ENST00000636238 IQSEC2Q5JU85 1478 aa12.29□□□□□ -0.44
CIITA-214ENST00000636238 ZNF518AQ6AHZ1 1483 aa12.29□□□□□ -0.44
CIITA-214ENST00000636238 FMN1Q68DA7 1419 aa12.28□□□□□ -0.44
CIITA-214ENST00000636238 DISP3Q9P2K9 1392 aa12.27□□□□□ -0.45
CIITA-214ENST00000636238 REREQ9P2R6 1566 aa12.26□□□□□ -0.45
CIITA-214ENST00000636238 PREX1Q8TCU6 1659 aa12.26□□□□□ -0.45
CIITA-214ENST00000636238 MLECQ14165 292 aa12.26□□□□□ -0.45
CIITA-214ENST00000636238 FER1L4A9Z1Z3 1794 aa12.25□□□□□ -0.45
CIITA-214ENST00000636238 KDM5CP41229 1560 aa12.24□□□□□ -0.45
CIITA-214ENST00000636238 AGLP35573 1532 aa12.23□□□□□ -0.45
CIITA-214ENST00000636238 MLH3Q9UHC1 1453 aa12.23□□□□□ -0.45
CIITA-214ENST00000636238 CNTLNQ9NXG0 1405 aa12.23□□□□□ -0.45
CIITA-214ENST00000636238 CHIC1Q5VXU3 224 aa12.23□□□□□ -0.45
CIITA-214ENST00000636238 CLIP1P30622 1438 aa12.22□□□□□ -0.45
CIITA-214ENST00000636238 TRAPPC8Q9Y2L5 1435 aa12.22□□□□□ -0.45
CIITA-214ENST00000636238 PLPPR3Q6T4P5 718 aa12.22□□□□□ -0.45
CIITA-214ENST00000636238 SIGLEC1Q9BZZ2 1709 aa12.22□□□□□ -0.45
CIITA-214ENST00000636238 TROQ12816 1431 aaPredicted RBP12.21□□□□□ -0.45
CIITA-214ENST00000636238 CDK13Q14004 1512 aaKnown RBP12.21□□□□□ -0.46
CIITA-214ENST00000636238 ESF1Q9H501 851 aaKnown RBP12.2□□□□□ -0.46
CIITA-214ENST00000636238 NPATQ14207 1427 aa12.2□□□□□ -0.46
CIITA-214ENST00000636238 CEBPAP49715 358 aaPredicted RBP12.19□□□□□ -0.46
CIITA-214ENST00000636238 ILDR2Q71H61 639 aa12.19□□□□□ -0.46
CIITA-214ENST00000636238 KIF14Q15058 1648 aa12.19□□□□□ -0.46
CIITA-214ENST00000636238 SETD1BQ9UPS6 1966 aaKnown RBP12.18□□□□□ -0.46
CIITA-214ENST00000636238 NCOA1Q15788 1441 aa12.18□□□□□ -0.46
CIITA-214ENST00000636238 ARHGAP5Q13017 1502 aa12.17□□□□□ -0.46
CIITA-214ENST00000636238 RANGAP1P46060 587 aaPredicted RBP12.17□□□□□ -0.46
CIITA-214ENST00000636238 AFAP1Q8N556 730 aa12.17□□□□□ -0.46
CIITA-214ENST00000636238 DIP2CQ9Y2E4 1556 aa12.17□□□□□ -0.46
CIITA-214ENST00000636238 LTBP4Q8N2S1 1624 aa12.16□□□□□ -0.46
CIITA-214ENST00000636238 SPATA31D1Q6ZQQ2 1576 aa12.16□□□□□ -0.46
CIITA-214ENST00000636238 MYO5CQ9NQX4 1742 aa12.16□□□□□ -0.46
CIITA-214ENST00000636238 STRCQ7RTU9 1775 aa12.15□□□□□ -0.46
CIITA-214ENST00000636238 MYT1LQ9UL68 1186 aa12.13□□□□□ -0.47
CIITA-214ENST00000636238 PKD2Q13563 968 aa12.12□□□□□ -0.47
CIITA-214ENST00000636238 PPP6R1Q9UPN7 881 aa12.12□□□□□ -0.47
CIITA-214ENST00000636238 PLA2R1Q13018 1463 aa12.12□□□□□ -0.47
CIITA-214ENST00000636238 CCDC18Q5T9S5 1454 aa12.12□□□□□ -0.47
CIITA-214ENST00000636238 ARHGAP35Q9NRY4 1499 aa12.12□□□□□ -0.47
CIITA-214ENST00000636238 ABCC1P33527 1531 aa12.11□□□□□ -0.47
CIITA-214ENST00000636238 ATP1B4Q9UN42 357 aaPredicted RBP12.1□□□□□ -0.47
CIITA-214ENST00000636238 ABCA6Q8N139 1617 aa12.09□□□□□ -0.47
CIITA-214ENST00000636238 UBTFP17480 764 aaKnown RBP12.09□□□□□ -0.47
CIITA-214ENST00000636238 C3P01024 1663 aa12.09□□□□□ -0.47
CIITA-214ENST00000636238 CASKIN1Q8WXD9 1431 aa12.08□□□□□ -0.48
CIITA-214ENST00000636238 ZMYM3Q14202 1370 aa12.07□□□□□ -0.48
CIITA-214ENST00000636238 MROH2AA6NES4 1674 aa12.07□□□□□ -0.48
CIITA-214ENST00000636238 KIAA1107Q9UPP5 1409 aa12.07□□□□□ -0.48
CIITA-214ENST00000636238 PREX2Q70Z35 1606 aa12.07□□□□□ -0.48
CIITA-214ENST00000636238 PLEKHH2Q8IVE3 1493 aa12.07□□□□□ -0.48
CIITA-214ENST00000636238 TCOF1Q13428 1488 aaKnown RBP12.06□□□□□ -0.48
CIITA-214ENST00000636238 CAMSAP1Q5T5Y3 1602 aa12.05□□□□□ -0.48
CIITA-214ENST00000636238 SPAG9O60271 1321 aaKnown RBP12.05□□□□□ -0.48
CIITA-214ENST00000636238 UBAP1LF5GYI3 381 aa12.04□□□□□ -0.48
CIITA-214ENST00000636238 SAMD9LQ8IVG5 1584 aa12.03□□□□□ -0.48
CIITA-214ENST00000636238 ITSN2Q9NZM3 1697 aa12.03□□□□□ -0.48
CIITA-214ENST00000636238 KIDINS220Q9ULH0 1771 aa12.02□□□□□ -0.48
CIITA-214ENST00000636238 ZNF335Q9H4Z2 1342 aaPredicted RBP12.02□□□□□ -0.49
CIITA-214ENST00000636238 PTPRKQ15262 1439 aa12.02□□□□□ -0.49
CIITA-214ENST00000636238 CDC42BPBQ9Y5S2 1711 aa12.01□□□□□ -0.49
CIITA-214ENST00000636238 FYCO1Q9BQS8 1478 aa12.01□□□□□ -0.49
CIITA-214ENST00000636238 PLXNC1O60486 1568 aa12.01□□□□□ -0.49
CIITA-214ENST00000636238 ZNF142P52746 1687 aaPredicted RBP12□□□□□ -0.49
CIITA-214ENST00000636238 NCKAP5LQ9HCH0 1330 aa12□□□□□ -0.49
CIITA-214ENST00000636238 A2MP01023 1474 aa12□□□□□ -0.49
CIITA-214ENST00000636238 FAM135AQ9P2D6 1515 aa12□□□□□ -0.49
CIITA-214ENST00000636238 CPS1P31327 1500 aa11.99□□□□□ -0.49
CIITA-214ENST00000636238 GPATCH8Q9UKJ3 1502 aaKnown RBP11.99□□□□□ -0.49
CIITA-214ENST00000636238 CEP170BQ9Y4F5 1589 aaPredicted RBP11.99□□□□□ -0.49
CIITA-214ENST00000636238 ATP7AQ04656 1500 aa11.98□□□□□ -0.49
CIITA-214ENST00000636238 A2ML1A8K2U0 1454 aa11.98□□□□□ -0.49
CIITA-214ENST00000636238 TOM1O60784 492 aa11.98□□□□□ -0.49
CIITA-214ENST00000636238 RTEL1-TNFRSF6BF6WH68 1400 aa11.97□□□□□ -0.49
CIITA-214ENST00000636238 MYO3AQ8NEV4 1616 aa11.97□□□□□ -0.49
CIITA-214ENST00000636238 SYCP2Q9BX26 1530 aa11.96□□□□□ -0.49
CIITA-214ENST00000636238 CFDP1Q9UEE9 299 aaPredicted RBP11.96□□□□□ -0.49
CIITA-214ENST00000636238 INO80Q9ULG1 1556 aaPredicted RBP11.96□□□□□ -0.5
CIITA-214ENST00000636238 ZNF777Q9ULD5 760 aaPredicted RBP11.95□□□□□ -0.5
CIITA-214ENST00000636238 CCNB3Q8WWL7 1395 aa11.94□□□□□ -0.5
CIITA-214ENST00000636238 HNRNPMP52272 730 aaKnown RBP eCLIP11.94□□□□□ -0.5
CIITA-214ENST00000636238 GGT6Q6P531 493 aa11.93□□□□□ -0.5
CIITA-214ENST00000636238 DHX29Q7Z478 1369 aaKnown RBP11.92□□□□□ -0.5
CIITA-214ENST00000636238 CDC42BPAQ5VT25 1732 aa11.92□□□□□ -0.5
CIITA-214ENST00000636238 SHANK2Q9UPX8 1470 aa11.92□□□□□ -0.5
CIITA-214ENST00000636238 RSPH4AQ5TD94 716 aa11.92□□□□□ -0.5
CIITA-214ENST00000636238 TNRQ92752 1358 aa11.92□□□□□ -0.5
CIITA-214ENST00000636238 HSPA1LP34931 641 aa11.91□□□□□ -0.5
CIITA-214ENST00000636238 ANKLE2Q86XL3 938 aa11.91□□□□□ -0.5
CIITA-214ENST00000636238 THEMISQ8N1K5 641 aaPredicted RBP11.91□□□□□ -0.5
CIITA-214ENST00000636238 LRRIQ1Q96JM4 1722 aa11.91□□□□□ -0.5
CIITA-214ENST00000636238 MED14O60244 1454 aa11.9□□□□□ -0.5
CIITA-214ENST00000636238 PZPP20742 1482 aa11.9□□□□□ -0.5
CIITA-214ENST00000636238 NLRP1Q9C000 1473 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms