RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 TMEM132AQ24JP5 1023 aa10.64□□□□□ -0.71
VPS11-209ENST00000622309 POLR3GLQ9BT43 218 aa10.64□□□□□ -0.71
VPS11-209ENST00000622309 HSP90AA2PQ14568 343 aaPredicted RBP10.63□□□□□ -0.71
VPS11-209ENST00000622309 POLA1P09884 1462 aaPredicted RBP10.63□□□□□ -0.71
VPS11-209ENST00000622309 TOP2BQ02880 1626 aa10.62□□□□□ -0.71
VPS11-209ENST00000622309 IGSF3O75054 1194 aa10.62□□□□□ -0.71
VPS11-209ENST00000622309 CUX1P39880 1505 aa10.62□□□□□ -0.71
VPS11-209ENST00000622309 CHMP7Q8WUX9 453 aaPredicted RBP10.62□□□□□ -0.71
VPS11-209ENST00000622309 MAGI1Q96QZ7 1491 aaPredicted RBP10.61□□□□□ -0.71
VPS11-209ENST00000622309 NAP1L5Q96NT1 182 aaPredicted RBP10.61□□□□□ -0.71
VPS11-209ENST00000622309 SNAPC4Q5SXM2 1469 aa10.6□□□□□ -0.71
VPS11-209ENST00000622309 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.6□□□□□ -0.71
VPS11-209ENST00000622309 FRAT1Q92837 279 aaPredicted RBP10.59□□□□□ -0.71
VPS11-209ENST00000622309 RRP9O43818 475 aaKnown RBP10.58□□□□□ -0.72
VPS11-209ENST00000622309 TDRD9Q8NDG6 1382 aaKnown RBP10.58□□□□□ -0.72
VPS11-209ENST00000622309 HSP90AA1P07900 732 aaKnown RBP10.57□□□□□ -0.72
VPS11-209ENST00000622309 GRIN2BQ13224 1484 aa10.57□□□□□ -0.72
VPS11-209ENST00000622309 CDK11BP21127 795 aaKnown RBP10.57□□□□□ -0.72
VPS11-209ENST00000622309 HIRIP3Q9BW71 556 aaPredicted RBP10.57□□□□□ -0.72
VPS11-209ENST00000622309 KIF21BO75037 1637 aa10.57□□□□□ -0.72
VPS11-209ENST00000622309 SYNJ2O15056 1496 aa10.57□□□□□ -0.72
VPS11-209ENST00000622309 GAPVD1Q14C86 1478 aa10.56□□□□□ -0.72
VPS11-209ENST00000622309 RAD54L2Q9Y4B4 1467 aa10.56□□□□□ -0.72
VPS11-209ENST00000622309 CNKSR2Q8WXI2 1034 aa10.56□□□□□ -0.72
VPS11-209ENST00000622309 PLCB2Q00722 1185 aa10.56□□□□□ -0.72
VPS11-209ENST00000622309 FBXO3Q9UK99 471 aa10.56□□□□□ -0.72
VPS11-209ENST00000622309 CHMP4BQ9H444 224 aaKnown RBP10.56□□□□□ -0.72
VPS11-209ENST00000622309 KIF27Q86VH2 1401 aa10.55□□□□□ -0.72
VPS11-209ENST00000622309 BIVM-ERCC5R4GMW8 1640 aa10.55□□□□□ -0.72
VPS11-209ENST00000622309 VPS8Q8N3P4 1428 aa10.53□□□□□ -0.72
VPS11-209ENST00000622309 NFKBIBQ15653 356 aa10.52□□□□□ -0.72
VPS11-209ENST00000622309 P3H3Q8IVL6 736 aa10.52□□□□□ -0.72
VPS11-209ENST00000622309 FGD5Q6ZNL6 1462 aa10.52□□□□□ -0.73
VPS11-209ENST00000622309 SIN3AQ96ST3 1273 aa10.52□□□□□ -0.73
VPS11-209ENST00000622309 ATP1B4Q9UN42 357 aaPredicted RBP10.52□□□□□ -0.73
VPS11-209ENST00000622309 PRXQ9BXM0 1461 aa10.5□□□□□ -0.73
VPS11-209ENST00000622309 DDRGK1Q96HY6 314 aa10.5□□□□□ -0.73
VPS11-209ENST00000622309 KANK4Q5T7N3 995 aaPredicted RBP10.49□□□□□ -0.73
VPS11-209ENST00000622309 PRDM10Q9NQV6 1147 aa10.49□□□□□ -0.73
VPS11-209ENST00000622309 PNNQ9H307 717 aaKnown RBP10.48□□□□□ -0.73
VPS11-209ENST00000622309 DCAF11Q8TEB1 546 aa10.47□□□□□ -0.73
VPS11-209ENST00000622309 NAP1L2Q9ULW6 460 aaPredicted RBP10.46□□□□□ -0.73
VPS11-209ENST00000622309 RRAGDQ9NQL2 400 aaPredicted RBP10.46□□□□□ -0.73
VPS11-209ENST00000622309 IGF1RP08069 1367 aa10.46□□□□□ -0.73
VPS11-209ENST00000622309 TCERG1O14776 1098 aaKnown RBP10.46□□□□□ -0.74
VPS11-209ENST00000622309 PBRM1Q86U86 1689 aa10.46□□□□□ -0.74
VPS11-209ENST00000622309 PDE4AP27815 886 aa10.45□□□□□ -0.74
VPS11-209ENST00000622309 FAM9BQ8IZU0 186 aa10.45□□□□□ -0.74
VPS11-209ENST00000622309 CARMIL1Q5VZK9 1371 aa10.44□□□□□ -0.74
VPS11-209ENST00000622309 ZBED9Q6R2W3 1325 aa10.43□□□□□ -0.74
VPS11-209ENST00000622309 RSPH4AQ5TD94 716 aa10.43□□□□□ -0.74
VPS11-209ENST00000622309 ERICH3Q5RHP9 1530 aa10.43□□□□□ -0.74
VPS11-209ENST00000622309 GRIN2AQ12879 1464 aa10.41□□□□□ -0.74
VPS11-209ENST00000622309 ABCA10Q8WWZ4 1543 aa10.41□□□□□ -0.74
VPS11-209ENST00000622309 BACH2Q9BYV9 841 aa10.41□□□□□ -0.74
VPS11-209ENST00000622309 CEP170Q5SW79 1584 aa10.4□□□□□ -0.74
VPS11-209ENST00000622309 ABCA5Q8WWZ7 1642 aa10.4□□□□□ -0.74
VPS11-209ENST00000622309 L1TD1Q5T7N2 865 aaKnown RBP10.4□□□□□ -0.75
VPS11-209ENST00000622309 ARHGAP35Q9NRY4 1499 aa10.39□□□□□ -0.75
VPS11-209ENST00000622309 NUP160Q12769 1436 aa10.39□□□□□ -0.75
VPS11-209ENST00000622309 ZFP91Q96JP5 570 aaPredicted RBP10.39□□□□□ -0.75
VPS11-209ENST00000622309 ERCC6L2Q5T890 1561 aa10.38□□□□□ -0.75
VPS11-209ENST00000622309 RAB3GAP2Q9H2M9 1393 aa10.38□□□□□ -0.75
VPS11-209ENST00000622309 FRAT2O75474 233 aaPredicted RBP10.38□□□□□ -0.75
VPS11-209ENST00000622309 MS4A1P11836 297 aa10.38□□□□□ -0.75
VPS11-209ENST00000622309 SLC4A3P48751 1232 aa10.38□□□□□ -0.75
VPS11-209ENST00000622309 MRS2Q9HD23 443 aa10.38□□□□□ -0.75
VPS11-209ENST00000622309 SHROOM2Q13796 1616 aa10.37□□□□□ -0.75
VPS11-209ENST00000622309 CALD1Q05682 793 aaKnown RBP10.37□□□□□ -0.75
VPS11-209ENST00000622309 KIF13AQ9H1H9 1805 aa10.37□□□□□ -0.75
VPS11-209ENST00000622309 MAPKBP1O60336 1514 aa10.37□□□□□ -0.75
VPS11-209ENST00000622309 AKNAQ7Z591 1439 aa10.36□□□□□ -0.75
VPS11-209ENST00000622309 CLCN1P35523 988 aa10.36□□□□□ -0.75
VPS11-209ENST00000622309 RGS3P49796 1198 aa10.36□□□□□ -0.75
VPS11-209ENST00000622309 CNPY4Q8N129 248 aa10.36□□□□□ -0.75
VPS11-209ENST00000622309 BBXQ8WY36 941 aaPredicted RBP10.36□□□□□ -0.75
VPS11-209ENST00000622309 PDCL3Q9H2J4 239 aa10.36□□□□□ -0.75
VPS11-209ENST00000622309 ADAMTS12P58397 1594 aa10.35□□□□□ -0.75
VPS11-209ENST00000622309 NPM1P06748 294 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS11-209ENST00000622309 FAM50AQ14320 339 aaKnown RBP10.35□□□□□ -0.75
VPS11-209ENST00000622309 FHAD1B1AJZ9 1412 aa10.35□□□□□ -0.75
VPS11-209ENST00000622309 ARID4BQ4LE39 1312 aaPredicted RBP10.35□□□□□ -0.75
VPS11-209ENST00000622309 CCDC184Q52MB2 194 aa10.34□□□□□ -0.75
VPS11-209ENST00000622309 ABCC10Q5T3U5 1492 aa10.34□□□□□ -0.75
VPS11-209ENST00000622309 FOXD1Q16676 465 aa10.34□□□□□ -0.75
VPS11-209ENST00000622309 NUDCQ9Y266 331 aa10.34□□□□□ -0.75
VPS11-209ENST00000622309 CCNB3Q8WWL7 1395 aa10.34□□□□□ -0.75
VPS11-209ENST00000622309 PLCD3Q8N3E9 789 aa10.34□□□□□ -0.75
VPS11-209ENST00000622309 RRBP1Q9P2E9 1410 aaKnown RBP10.33□□□□□ -0.76
VPS11-209ENST00000622309 FAM69CQ0P6D2 419 aa10.33□□□□□ -0.76
VPS11-209ENST00000622309 ILDR1Q86SU0 546 aaPredicted RBP10.33□□□□□ -0.76
VPS11-209ENST00000622309 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
VPS11-209ENST00000622309 PRDM4Q9UKN5 801 aa10.32□□□□□ -0.76
VPS11-209ENST00000622309 FHOD3Q2V2M9 1422 aa10.32□□□□□ -0.76
VPS11-209ENST00000622309 HSP90B1P14625 803 aaKnown RBP10.32□□□□□ -0.76
VPS11-209ENST00000622309 KDM2AQ9Y2K7 1162 aa10.32□□□□□ -0.76
VPS11-209ENST00000622309 CENPJQ9HC77 1338 aaPredicted RBP10.32□□□□□ -0.76
VPS11-209ENST00000622309 RNF123Q5XPI4 1314 aa10.31□□□□□ -0.76
VPS11-209ENST00000622309 PRG4Q92954 1404 aaPredicted RBP10.31□□□□□ -0.76
VPS11-209ENST00000622309 TONSLQ96HA7 1378 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms