RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 SIGLEC1Q9BZZ2 1709 aa14.19□□□□□ -0.14
GPC6-202ENST00000617456 SCAPERQ9BY12 1400 aa14.19□□□□□ -0.14
GPC6-202ENST00000617456 EHMT2Q96KQ7 1210 aa14.19□□□□□ -0.14
GPC6-202ENST00000617456 CDK13Q14004 1512 aaKnown RBP14.19□□□□□ -0.14
GPC6-202ENST00000617456 HECW1Q76N89 1606 aa14.18□□□□□ -0.14
GPC6-202ENST00000617456 MAGI2Q86UL8 1455 aa14.18□□□□□ -0.14
GPC6-202ENST00000617456 PELP1Q8IZL8 1130 aaKnown RBP14.17□□□□□ -0.14
GPC6-202ENST00000617456 CEBPAP49715 358 aaPredicted RBP14.16□□□□□ -0.14
GPC6-202ENST00000617456 PLCH2O75038 1416 aa14.15□□□□□ -0.14
GPC6-202ENST00000617456 FER1L4A9Z1Z3 1794 aa14.15□□□□□ -0.14
GPC6-202ENST00000617456 EFCAB2Q5VUJ9 269 aa14.14□□□□□ -0.15
GPC6-202ENST00000617456 MYT1LQ9UL68 1186 aa14.14□□□□□ -0.15
GPC6-202ENST00000617456 ATP10AO60312 1499 aa14.13□□□□□ -0.15
GPC6-202ENST00000617456 C9orf84Q5VXU9 1444 aa14.13□□□□□ -0.15
GPC6-202ENST00000617456 ARHGEF12Q9NZN5 1544 aa14.11□□□□□ -0.15
GPC6-202ENST00000617456 UBTFP17480 764 aaKnown RBP14.1□□□□□ -0.15
GPC6-202ENST00000617456 AFAP1Q8N556 730 aa14.09□□□□□ -0.15
GPC6-202ENST00000617456 CDK11AQ9UQ88 783 aaPredicted RBP14.09□□□□□ -0.15
GPC6-202ENST00000617456 DISP3Q9P2K9 1392 aa14.09□□□□□ -0.15
GPC6-202ENST00000617456 DMRT2Q9Y5R5 561 aa14.07□□□□□ -0.16
GPC6-202ENST00000617456 PREX1Q8TCU6 1659 aa14.07□□□□□ -0.16
GPC6-202ENST00000617456 UHRF1BP1Q6BDS2 1440 aa14.07□□□□□ -0.16
GPC6-202ENST00000617456 MYO5CQ9NQX4 1742 aa14.06□□□□□ -0.16
GPC6-202ENST00000617456 FMN1Q68DA7 1419 aa14.06□□□□□ -0.16
GPC6-202ENST00000617456 ARHGAP5Q13017 1502 aa14.05□□□□□ -0.16
GPC6-202ENST00000617456 KIF14Q15058 1648 aa14.05□□□□□ -0.16
GPC6-202ENST00000617456 ILDR2Q71H61 639 aa14.05□□□□□ -0.16
GPC6-202ENST00000617456 ZNF518AQ6AHZ1 1483 aa14.05□□□□□ -0.16
GPC6-202ENST00000617456 ESF1Q9H501 851 aaKnown RBP14.03□□□□□ -0.16
GPC6-202ENST00000617456 TROQ12816 1431 aaPredicted RBP14.03□□□□□ -0.16
GPC6-202ENST00000617456 STRCQ7RTU9 1775 aa14.02□□□□□ -0.16
GPC6-202ENST00000617456 ARHGAP35Q9NRY4 1499 aa14.02□□□□□ -0.16
GPC6-202ENST00000617456 CLIP1P30622 1438 aa14.02□□□□□ -0.16
GPC6-202ENST00000617456 SETD1BQ9UPS6 1966 aaKnown RBP14□□□□□ -0.17
GPC6-202ENST00000617456 KDM5CP41229 1560 aa14□□□□□ -0.17
GPC6-202ENST00000617456 DIP2CQ9Y2E4 1556 aa14□□□□□ -0.17
GPC6-202ENST00000617456 SOCS7O14512 581 aa13.98□□□□□ -0.17
GPC6-202ENST00000617456 TRAPPC8Q9Y2L5 1435 aa13.98□□□□□ -0.17
GPC6-202ENST00000617456 PTPRTO14522 1441 aa13.97□□□□□ -0.17
GPC6-202ENST00000617456 ABCA6Q8N139 1617 aa13.97□□□□□ -0.17
GPC6-202ENST00000617456 MLH3Q9UHC1 1453 aa13.96□□□□□ -0.17
GPC6-202ENST00000617456 C3P01024 1663 aa13.95□□□□□ -0.18
GPC6-202ENST00000617456 REREQ9P2R6 1566 aa13.94□□□□□ -0.18
GPC6-202ENST00000617456 ZNF777Q9ULD5 760 aaPredicted RBP13.94□□□□□ -0.18
GPC6-202ENST00000617456 CDC42BPBQ9Y5S2 1711 aa13.94□□□□□ -0.18
GPC6-202ENST00000617456 ABCC1P33527 1531 aa13.93□□□□□ -0.18
GPC6-202ENST00000617456 AGLP35573 1532 aa13.93□□□□□ -0.18
GPC6-202ENST00000617456 LRRIQ1Q96JM4 1722 aa13.92□□□□□ -0.18
GPC6-202ENST00000617456 SPATA31D1Q6ZQQ2 1576 aa13.92□□□□□ -0.18
GPC6-202ENST00000617456 NCOA1Q15788 1441 aa13.91□□□□□ -0.18
GPC6-202ENST00000617456 NCKAP5LQ9HCH0 1330 aa13.9□□□□□ -0.18
GPC6-202ENST00000617456 CNTLNQ9NXG0 1405 aa13.9□□□□□ -0.18
GPC6-202ENST00000617456 PREX2Q70Z35 1606 aa13.9□□□□□ -0.18
GPC6-202ENST00000617456 LTBP4Q8N2S1 1624 aa13.9□□□□□ -0.18
GPC6-202ENST00000617456 ITSN2Q9NZM3 1697 aa13.9□□□□□ -0.18
GPC6-202ENST00000617456 KIDINS220Q9ULH0 1771 aa13.88□□□□□ -0.19
GPC6-202ENST00000617456 ZMYM3Q14202 1370 aa13.88□□□□□ -0.19
GPC6-202ENST00000617456 CAMSAP1Q5T5Y3 1602 aa13.88□□□□□ -0.19
GPC6-202ENST00000617456 CASKIN1Q8WXD9 1431 aa13.88□□□□□ -0.19
GPC6-202ENST00000617456 SPAG9O60271 1321 aaKnown RBP13.88□□□□□ -0.19
GPC6-202ENST00000617456 CCDC18Q5T9S5 1454 aa13.87□□□□□ -0.19
GPC6-202ENST00000617456 HNRNPMP52272 730 aaKnown RBP eCLIP13.87□□□□□ -0.19
GPC6-202ENST00000617456 ZNF335Q9H4Z2 1342 aaPredicted RBP13.87□□□□□ -0.19
GPC6-202ENST00000617456 UBAP1LF5GYI3 381 aa13.86□□□□□ -0.19
GPC6-202ENST00000617456 SENP3Q9H4L4 574 aaPredicted RBP13.86□□□□□ -0.19
GPC6-202ENST00000617456 SAMD9LQ8IVG5 1584 aa13.85□□□□□ -0.19
GPC6-202ENST00000617456 NPATQ14207 1427 aa13.85□□□□□ -0.19
GPC6-202ENST00000617456 IQSEC2Q5JU85 1478 aa13.85□□□□□ -0.19
GPC6-202ENST00000617456 GGT6Q6P531 493 aa13.84□□□□□ -0.19
GPC6-202ENST00000617456 SYCP2Q9BX26 1530 aa13.84□□□□□ -0.19
GPC6-202ENST00000617456 CDC42BPAQ5VT25 1732 aa13.84□□□□□ -0.19
GPC6-202ENST00000617456 SUPT6HQ7KZ85 1726 aaKnown RBP13.83□□□□□ -0.2
GPC6-202ENST00000617456 GPATCH8Q9UKJ3 1502 aaKnown RBP13.81□□□□□ -0.2
GPC6-202ENST00000617456 CFDP1Q9UEE9 299 aaPredicted RBP13.81□□□□□ -0.2
GPC6-202ENST00000617456 MROH2AA6NES4 1674 aa13.81□□□□□ -0.2
GPC6-202ENST00000617456 PKD2Q13563 968 aa13.8□□□□□ -0.2
GPC6-202ENST00000617456 A2MP01023 1474 aa13.8□□□□□ -0.2
GPC6-202ENST00000617456 ATP7AQ04656 1500 aa13.8□□□□□ -0.2
GPC6-202ENST00000617456 CLTCQ00610 1675 aaKnown RBP13.79□□□□□ -0.2
GPC6-202ENST00000617456 PPP6R1Q9UPN7 881 aa13.79□□□□□ -0.2
GPC6-202ENST00000617456 PTPRKQ15262 1439 aa13.79□□□□□ -0.2
GPC6-202ENST00000617456 FYCO1Q9BQS8 1478 aa13.79□□□□□ -0.2
GPC6-202ENST00000617456 SCAF1Q9H7N4 1312 aaKnown RBP13.78□□□□□ -0.2
GPC6-202ENST00000617456 CCNB3Q8WWL7 1395 aa13.78□□□□□ -0.2
GPC6-202ENST00000617456 PLA2R1Q13018 1463 aa13.77□□□□□ -0.21
GPC6-202ENST00000617456 MYO3AQ8NEV4 1616 aa13.77□□□□□ -0.21
GPC6-202ENST00000617456 KIAA1107Q9UPP5 1409 aa13.77□□□□□ -0.21
GPC6-202ENST00000617456 CEP170BQ9Y4F5 1589 aaPredicted RBP13.76□□□□□ -0.21
GPC6-202ENST00000617456 PLEKHH2Q8IVE3 1493 aa13.76□□□□□ -0.21
GPC6-202ENST00000617456 PLXNC1O60486 1568 aa13.75□□□□□ -0.21
GPC6-202ENST00000617456 TCOF1Q13428 1488 aaKnown RBP13.75□□□□□ -0.21
GPC6-202ENST00000617456 ZNF644Q9H582 1327 aaPredicted RBP13.75□□□□□ -0.21
GPC6-202ENST00000617456 PIP4K2BP78356 416 aa13.75□□□□□ -0.21
GPC6-202ENST00000617456 INO80Q9ULG1 1556 aaPredicted RBP13.75□□□□□ -0.21
GPC6-202ENST00000617456 ZNF142P52746 1687 aaPredicted RBP13.74□□□□□ -0.21
GPC6-202ENST00000617456 MTUS2Q5JR59 1369 aa13.73□□□□□ -0.21
GPC6-202ENST00000617456 HSPA1LP34931 641 aa13.72□□□□□ -0.21
GPC6-202ENST00000617456 FBXO31Q5XUX0 539 aaPredicted RBP13.71□□□□□ -0.21
GPC6-202ENST00000617456 A2ML1A8K2U0 1454 aa13.71□□□□□ -0.21
GPC6-202ENST00000617456 TOM1O60784 492 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms