RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PKD2Q13563 968 aa20.14■□□□□ 0.81
SHROOM1-208ENST00000617339 PBRM1Q86U86 1689 aa20.14■□□□□ 0.81
SHROOM1-208ENST00000617339 UACAQ9BZF9 1416 aa20.13■□□□□ 0.81
SHROOM1-208ENST00000617339 SAMD9Q5K651 1589 aa20.13■□□□□ 0.81
SHROOM1-208ENST00000617339 SENP3Q9H4L4 574 aaPredicted RBP20.11■□□□□ 0.81
SHROOM1-208ENST00000617339 CARMIL2Q6F5E8 1435 aa20.11■□□□□ 0.81
SHROOM1-208ENST00000617339 DISP1Q96F81 1524 aa20.1■□□□□ 0.81
SHROOM1-208ENST00000617339 EIF4G3O43432 1585 aaKnown RBP20.1■□□□□ 0.81
SHROOM1-208ENST00000617339 PTPN23Q9H3S7 1636 aa20.1■□□□□ 0.81
SHROOM1-208ENST00000617339 LRRIQ1Q96JM4 1722 aa20.1■□□□□ 0.81
SHROOM1-208ENST00000617339 SUPT6HQ7KZ85 1726 aaKnown RBP20.09■□□□□ 0.81
SHROOM1-208ENST00000617339 EHBP1L1Q8N3D4 1523 aa20.09■□□□□ 0.81
SHROOM1-208ENST00000617339 EIF4G2P78344 907 aaKnown RBP eCLIP20.09■□□□□ 0.81
SHROOM1-208ENST00000617339 NUP153P49790 1475 aaKnown RBP20.08■□□□□ 0.81
SHROOM1-208ENST00000617339 NBPF8Q3BBV2 869 aa20.07■□□□□ 0.8
SHROOM1-208ENST00000617339 FAM9BQ8IZU0 186 aa20.07■□□□□ 0.8
SHROOM1-208ENST00000617339 ERICH6Q7L0X2 663 aa20.06■□□□□ 0.8
SHROOM1-208ENST00000617339 IRX6P78412 446 aaPredicted RBP20.05■□□□□ 0.8
SHROOM1-208ENST00000617339 PTPRGP23470 1445 aa20.05■□□□□ 0.8
SHROOM1-208ENST00000617339 WDR62O43379 1518 aa20.04■□□□□ 0.8
SHROOM1-208ENST00000617339 UGGT2Q9NYU1 1516 aa20.04■□□□□ 0.8
SHROOM1-208ENST00000617339 HECW1Q76N89 1606 aa20.04■□□□□ 0.8
SHROOM1-208ENST00000617339 C11orf95C9JLR9 678 aaPredicted RBP20.03■□□□□ 0.8
SHROOM1-208ENST00000617339 NPM1P06748 294 aaKnown RBP eCLIP20.03■□□□□ 0.8
SHROOM1-208ENST00000617339 HNRNPUQ00839 825 aaKnown RBP eCLIP20.03■□□□□ 0.8
SHROOM1-208ENST00000617339 TIMELESSQ9UNS1 1208 aa20.03■□□□□ 0.8
SHROOM1-208ENST00000617339 SYNJ2O15056 1496 aa20.03■□□□□ 0.8
SHROOM1-208ENST00000617339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.03■□□□□ 0.8
SHROOM1-208ENST00000617339 ABCC5O15440 1437 aa20.01■□□□□ 0.79
SHROOM1-208ENST00000617339 KDM6BO15054 1643 aa20.01■□□□□ 0.79
SHROOM1-208ENST00000617339 NUP155O75694 1391 aa20.01■□□□□ 0.79
SHROOM1-208ENST00000617339 MSH5O43196 834 aa20■□□□□ 0.79
SHROOM1-208ENST00000617339 DAPK1P53355 1430 aa19.99■□□□□ 0.79
SHROOM1-208ENST00000617339 WASHC2AQ641Q2 1341 aa19.98■□□□□ 0.79
SHROOM1-208ENST00000617339 DCAF11Q8TEB1 546 aa19.97■□□□□ 0.79
SHROOM1-208ENST00000617339 CCDC184Q52MB2 194 aa19.97■□□□□ 0.79
SHROOM1-208ENST00000617339 CEP170Q5SW79 1584 aa19.96■□□□□ 0.79
SHROOM1-208ENST00000617339 ARHGEF11O15085 1522 aa19.96■□□□□ 0.79
SHROOM1-208ENST00000617339 KIAA0556O60303 1618 aa19.96■□□□□ 0.79
SHROOM1-208ENST00000617339 TROQ12816 1431 aaPredicted RBP19.95■□□□□ 0.78
SHROOM1-208ENST00000617339 PLPPR3Q6T4P5 718 aa19.93■□□□□ 0.78
SHROOM1-208ENST00000617339 MAGI1Q96QZ7 1491 aaPredicted RBP19.93■□□□□ 0.78
SHROOM1-208ENST00000617339 MIA2Q96PC5 1412 aa19.91■□□□□ 0.78
SHROOM1-208ENST00000617339 CHGAP10645 457 aaKnown RBP19.9■□□□□ 0.78
SHROOM1-208ENST00000617339 SALL2Q9Y467 1007 aaPredicted RBP19.9■□□□□ 0.78
SHROOM1-208ENST00000617339 MRS2Q9HD23 443 aa19.89■□□□□ 0.77
SHROOM1-208ENST00000617339 ANKRD30AQ9BXX3 1397 aa19.89■□□□□ 0.77
SHROOM1-208ENST00000617339 GPATCH8Q9UKJ3 1502 aaKnown RBP19.88■□□□□ 0.77
SHROOM1-208ENST00000617339 RAPGEF6Q8TEU7 1601 aa19.88■□□□□ 0.77
SHROOM1-208ENST00000617339 ATP10BO94823 1461 aa19.88■□□□□ 0.77
SHROOM1-208ENST00000617339 CARD11Q9BXL7 1154 aa19.88■□□□□ 0.77
SHROOM1-208ENST00000617339 CAMSAP2Q08AD1 1489 aa19.86■□□□□ 0.77
SHROOM1-208ENST00000617339 KIF14Q15058 1648 aa19.85■□□□□ 0.77
SHROOM1-208ENST00000617339 ANKRD50Q9ULJ7 1429 aa19.84■□□□□ 0.77
SHROOM1-208ENST00000617339 AFAP1Q8N556 730 aa19.84■□□□□ 0.77
SHROOM1-208ENST00000617339 NCOA1Q15788 1441 aa19.84■□□□□ 0.77
SHROOM1-208ENST00000617339 DENND4BO75064 1496 aaPredicted RBP19.84■□□□□ 0.77
SHROOM1-208ENST00000617339 ANKRD30BQ9BXX2 1392 aa19.83■□□□□ 0.77
SHROOM1-208ENST00000617339 KIF15Q9NS87 1388 aa19.81■□□□□ 0.76
SHROOM1-208ENST00000617339 TCOF1Q13428 1488 aaKnown RBP19.8■□□□□ 0.76
SHROOM1-208ENST00000617339 NUP160Q12769 1436 aa19.79■□□□□ 0.76
SHROOM1-208ENST00000617339 ST20-MTHFSA0A0A6YYL1 179 aa19.78■□□□□ 0.76
SHROOM1-208ENST00000617339 AKNAQ7Z591 1439 aa19.78■□□□□ 0.76
SHROOM1-208ENST00000617339 KIF7Q2M1P5 1343 aa19.77■□□□□ 0.76
SHROOM1-208ENST00000617339 C9orf84Q5VXU9 1444 aa19.76■□□□□ 0.75
SHROOM1-208ENST00000617339 PRKCSHP14314 528 aaPredicted RBP19.75■□□□□ 0.75
SHROOM1-208ENST00000617339 CYB5RLQ6IPT4 315 aa19.75■□□□□ 0.75
SHROOM1-208ENST00000617339 NBPF1Q3BBV0 1214 aa19.74■□□□□ 0.75
SHROOM1-208ENST00000617339 CCER2I3L3R5 266 aa19.73■□□□□ 0.75
SHROOM1-208ENST00000617339 ERCC6L2Q5T890 1561 aa19.73■□□□□ 0.75
SHROOM1-208ENST00000617339 NBR1Q14596 966 aa19.71■□□□□ 0.75
SHROOM1-208ENST00000617339 PRKRIP1Q9H875 184 aaPredicted RBP19.71■□□□□ 0.75
SHROOM1-208ENST00000617339 ROCK1Q13464 1354 aa19.71■□□□□ 0.75
SHROOM1-208ENST00000617339 DEKP35659 375 aaKnown RBP19.71■□□□□ 0.75
SHROOM1-208ENST00000617339 EFCAB2Q5VUJ9 269 aa19.7■□□□□ 0.74
SHROOM1-208ENST00000617339 CCDC7Q96M83 1385 aa19.69■□□□□ 0.74
SHROOM1-208ENST00000617339 USP47Q96K76 1375 aa19.68■□□□□ 0.74
SHROOM1-208ENST00000617339 ARHGAP5Q13017 1502 aa19.66■□□□□ 0.74
SHROOM1-208ENST00000617339 OSCARQ8IYS5 282 aa19.66■□□□□ 0.74
SHROOM1-208ENST00000617339 KIF3BO15066 747 aa19.65■□□□□ 0.74
SHROOM1-208ENST00000617339 KIAA1107Q9UPP5 1409 aa19.65■□□□□ 0.74
SHROOM1-208ENST00000617339 PZPP20742 1482 aa19.65■□□□□ 0.74
SHROOM1-208ENST00000617339 CC2D1BQ5T0F9 858 aaKnown RBP19.64■□□□□ 0.74
SHROOM1-208ENST00000617339 TMC1Q8TDI8 760 aa19.64■□□□□ 0.74
SHROOM1-208ENST00000617339 RPRD2Q5VT52 1461 aaKnown RBP19.64■□□□□ 0.73
SHROOM1-208ENST00000617339 FANCIQ9NVI1 1328 aa19.62■□□□□ 0.73
SHROOM1-208ENST00000617339 DNMT1P26358 1616 aaKnown RBP19.62■□□□□ 0.73
SHROOM1-208ENST00000617339 SPAG9O60271 1321 aaKnown RBP19.62■□□□□ 0.73
SHROOM1-208ENST00000617339 ROCK2O75116 1388 aaKnown RBP19.61■□□□□ 0.73
SHROOM1-208ENST00000617339 NUTM2DQ5VT03 806 aaPredicted RBP19.61■□□□□ 0.73
SHROOM1-208ENST00000617339 GGT6Q6P531 493 aa19.61■□□□□ 0.73
SHROOM1-208ENST00000617339 KDM5BQ9UGL1 1544 aa19.59■□□□□ 0.73
SHROOM1-208ENST00000617339 MLECQ14165 292 aa19.58■□□□□ 0.73
SHROOM1-208ENST00000617339 PLEKHH2Q8IVE3 1493 aa19.57■□□□□ 0.72
SHROOM1-208ENST00000617339 B4GALNT3Q6L9W6 998 aa19.56■□□□□ 0.72
SHROOM1-208ENST00000617339 ABCC10Q5T3U5 1492 aa19.55■□□□□ 0.72
SHROOM1-208ENST00000617339 CCDC144AA2RUR9 1427 aa19.55■□□□□ 0.72
SHROOM1-208ENST00000617339 ANO8Q9HCE9 1232 aaPredicted RBP19.54■□□□□ 0.72
SHROOM1-208ENST00000617339 ABCA8O94911 1581 aa19.54■□□□□ 0.72
SHROOM1-208ENST00000617339 CNTLNQ9NXG0 1405 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms