RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 FYCO1Q9BQS8 1478 aa11.9□□□□□ -0.5
PDLIM5-222ENST00000615540 MYOM3Q5VTT5 1437 aa11.89□□□□□ -0.51
PDLIM5-222ENST00000615540 CCER2I3L3R5 266 aa11.88□□□□□ -0.51
PDLIM5-222ENST00000615540 NEUROD2Q15784 382 aa11.88□□□□□ -0.51
PDLIM5-222ENST00000615540 ZBTB47Q9UFB7 747 aaPredicted RBP11.88□□□□□ -0.51
PDLIM5-222ENST00000615540 MRC2Q9UBG0 1479 aa11.88□□□□□ -0.51
PDLIM5-222ENST00000615540 B4GALNT3Q6L9W6 998 aa11.87□□□□□ -0.51
PDLIM5-222ENST00000615540 SAFB2Q14151 953 aaKnown RBP eCLIP11.87□□□□□ -0.51
PDLIM5-222ENST00000615540 ARID4BQ4LE39 1312 aaPredicted RBP11.87□□□□□ -0.51
PDLIM5-222ENST00000615540 NUTM2DQ5VT03 806 aaPredicted RBP11.86□□□□□ -0.51
PDLIM5-222ENST00000615540 MLECQ14165 292 aa11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 GGT6Q6P531 493 aa11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 KANK1Q14678 1352 aa11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 ZBTB7CA1YPR0 619 aa11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 PPM1GO15355 546 aaPredicted RBP11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 GRIN2BQ13224 1484 aa11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 SNAPC4Q5SXM2 1469 aa11.85□□□□□ -0.51
PDLIM5-222ENST00000615540 TMF1P82094 1093 aa11.84□□□□□ -0.51
PDLIM5-222ENST00000615540 EFCAB5A4FU69 1503 aa11.83□□□□□ -0.51
PDLIM5-222ENST00000615540 CDK13Q14004 1512 aaKnown RBP11.83□□□□□ -0.51
PDLIM5-222ENST00000615540 PTPRGP23470 1445 aa11.82□□□□□ -0.52
PDLIM5-222ENST00000615540 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.82□□□□□ -0.52
PDLIM5-222ENST00000615540 ABCA10Q8WWZ4 1543 aa11.8□□□□□ -0.52
PDLIM5-222ENST00000615540 EHBP1L1Q8N3D4 1523 aa11.8□□□□□ -0.52
PDLIM5-222ENST00000615540 STK26Q9P289 416 aa11.8□□□□□ -0.52
PDLIM5-222ENST00000615540 HECW1Q76N89 1606 aa11.8□□□□□ -0.52
PDLIM5-222ENST00000615540 URB2Q14146 1524 aaKnown RBP11.8□□□□□ -0.52
PDLIM5-222ENST00000615540 KIF3BO15066 747 aa11.79□□□□□ -0.52
PDLIM5-222ENST00000615540 EFCAB2Q5VUJ9 269 aa11.79□□□□□ -0.52
PDLIM5-222ENST00000615540 PPP4R2Q9NY27 417 aa11.79□□□□□ -0.52
PDLIM5-222ENST00000615540 CDCA8Q53HL2 280 aa11.79□□□□□ -0.52
PDLIM5-222ENST00000615540 SUPT6HQ7KZ85 1726 aaKnown RBP11.79□□□□□ -0.52
PDLIM5-222ENST00000615540 UACAQ9BZF9 1416 aa11.79□□□□□ -0.52
PDLIM5-222ENST00000615540 CUL7Q14999 1698 aa11.78□□□□□ -0.52
PDLIM5-222ENST00000615540 C14orf37Q86TY3 774 aa11.78□□□□□ -0.52
PDLIM5-222ENST00000615540 POGKQ9P215 609 aa11.78□□□□□ -0.52
PDLIM5-222ENST00000615540 KTN1Q86UP2 1357 aaKnown RBP11.78□□□□□ -0.52
PDLIM5-222ENST00000615540 IFT140Q96RY7 1462 aa11.77□□□□□ -0.52
PDLIM5-222ENST00000615540 LAS1LQ9Y4W2 734 aaKnown RBP11.77□□□□□ -0.52
PDLIM5-222ENST00000615540 LAMC3Q9Y6N6 1575 aa11.77□□□□□ -0.53
PDLIM5-222ENST00000615540 PRG4Q92954 1404 aaPredicted RBP11.77□□□□□ -0.53
PDLIM5-222ENST00000615540 WDR97A6NE52 1622 aa11.76□□□□□ -0.53
PDLIM5-222ENST00000615540 SPAG9O60271 1321 aaKnown RBP11.76□□□□□ -0.53
PDLIM5-222ENST00000615540 ST20-MTHFSA0A0A6YYL1 179 aa11.75□□□□□ -0.53
PDLIM5-222ENST00000615540 FRAT1Q92837 279 aaPredicted RBP11.74□□□□□ -0.53
PDLIM5-222ENST00000615540 USP47Q96K76 1375 aa11.74□□□□□ -0.53
PDLIM5-222ENST00000615540 CCDC144AA2RUR9 1427 aa11.74□□□□□ -0.53
PDLIM5-222ENST00000615540 U2SURPO15042 1029 aaKnown RBP11.73□□□□□ -0.53
PDLIM5-222ENST00000615540 CFAP53Q96M91 514 aa11.73□□□□□ -0.53
PDLIM5-222ENST00000615540 SRPK2P78362 688 aaKnown RBP11.73□□□□□ -0.53
PDLIM5-222ENST00000615540 IQGAP2Q13576 1575 aa11.73□□□□□ -0.53
PDLIM5-222ENST00000615540 CCDC146Q8IYE0 955 aa11.73□□□□□ -0.53
PDLIM5-222ENST00000615540 ARHGAP5Q13017 1502 aa11.72□□□□□ -0.53
PDLIM5-222ENST00000615540 ARXQ96QS3 562 aa11.71□□□□□ -0.53
PDLIM5-222ENST00000615540 PTPN23Q9H3S7 1636 aa11.71□□□□□ -0.53
PDLIM5-222ENST00000615540 MORC1Q86VD1 984 aa11.71□□□□□ -0.53
PDLIM5-222ENST00000615540 EPRSP07814 1512 aaKnown RBP11.7□□□□□ -0.54
PDLIM5-222ENST00000615540 SOX12O15370 315 aa11.7□□□□□ -0.54
PDLIM5-222ENST00000615540 RGS3P49796 1198 aa11.7□□□□□ -0.54
PDLIM5-222ENST00000615540 KIF15Q9NS87 1388 aa11.7□□□□□ -0.54
PDLIM5-222ENST00000615540 TSHZ2Q9NRE2 1034 aa11.69□□□□□ -0.54
PDLIM5-222ENST00000615540 WASHC2AQ641Q2 1341 aa11.69□□□□□ -0.54
PDLIM5-222ENST00000615540 DAPK1P53355 1430 aa11.69□□□□□ -0.54
PDLIM5-222ENST00000615540 UPF2Q9HAU5 1272 aaKnown RBP11.69□□□□□ -0.54
PDLIM5-222ENST00000615540 RBM19Q9Y4C8 960 aaKnown RBP11.69□□□□□ -0.54
PDLIM5-222ENST00000615540 ZNF608Q9ULD9 1512 aaPredicted RBP11.69□□□□□ -0.54
PDLIM5-222ENST00000615540 PANK3Q9H999 370 aa11.68□□□□□ -0.54
PDLIM5-222ENST00000615540 RALBP1Q15311 655 aa11.68□□□□□ -0.54
PDLIM5-222ENST00000615540 PRKRIP1Q9H875 184 aaPredicted RBP11.68□□□□□ -0.54
PDLIM5-222ENST00000615540 KIF7Q2M1P5 1343 aa11.68□□□□□ -0.54
PDLIM5-222ENST00000615540 MAPK8IP3Q9UPT6 1336 aa11.67□□□□□ -0.54
PDLIM5-222ENST00000615540 ANKRD50Q9ULJ7 1429 aa11.67□□□□□ -0.54
PDLIM5-222ENST00000615540 CTTNBP2Q8WZ74 1663 aa11.67□□□□□ -0.54
PDLIM5-222ENST00000615540 FTSJ3Q8IY81 847 aaKnown RBP11.67□□□□□ -0.54
PDLIM5-222ENST00000615540 HFM1A2PYH4 1435 aa11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 KIF21AQ7Z4S6 1674 aa11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 WASHC2CQ9Y4E1 1318 aa11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 CCDC7Q96M83 1385 aa11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 HSP90AA1P07900 732 aaKnown RBP11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 ANP32EQ9BTT0 268 aa11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 TRAK1Q9UPV9 953 aa11.66□□□□□ -0.54
PDLIM5-222ENST00000615540 RSPH4AQ5TD94 716 aa11.65□□□□□ -0.54
PDLIM5-222ENST00000615540 PLB1Q6P1J6 1458 aa11.65□□□□□ -0.55
PDLIM5-222ENST00000615540 NBPF8Q3BBV2 869 aa11.64□□□□□ -0.55
PDLIM5-222ENST00000615540 RCAN3Q9UKA8 241 aa11.64□□□□□ -0.55
PDLIM5-222ENST00000615540 CNTLNQ9NXG0 1405 aa11.64□□□□□ -0.55
PDLIM5-222ENST00000615540 EIF3AQ14152 1382 aaKnown RBP11.64□□□□□ -0.55
PDLIM5-222ENST00000615540 NUDCQ9Y266 331 aa11.64□□□□□ -0.55
PDLIM5-222ENST00000615540 SYNJ2O15056 1496 aa11.64□□□□□ -0.55
PDLIM5-222ENST00000615540 MYBBP1AQ9BQG0 1328 aaKnown RBP11.63□□□□□ -0.55
PDLIM5-222ENST00000615540 C9orf84Q5VXU9 1444 aa11.63□□□□□ -0.55
PDLIM5-222ENST00000615540 TRHP20396 242 aaPredicted RBP11.63□□□□□ -0.55
PDLIM5-222ENST00000615540 NAIPQ13075 1403 aa11.62□□□□□ -0.55
PDLIM5-222ENST00000615540 ARHGEF11O15085 1522 aa11.62□□□□□ -0.55
PDLIM5-222ENST00000615540 THOC2Q8NI27 1593 aaKnown RBP11.62□□□□□ -0.55
PDLIM5-222ENST00000615540 CAMSAP2Q08AD1 1489 aa11.62□□□□□ -0.55
PDLIM5-222ENST00000615540 PLIN1O60240 522 aa11.61□□□□□ -0.55
PDLIM5-222ENST00000615540 GRIN2AQ12879 1464 aa11.61□□□□□ -0.55
PDLIM5-222ENST00000615540 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
PDLIM5-222ENST00000615540 TROQ12816 1431 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms