RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 GGT6Q6P531 493 aa17.46■□□□□ 0.39
TCF3-220ENST00000611869 TIAM1Q13009 1591 aa17.45■□□□□ 0.38
TCF3-220ENST00000611869 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.45■□□□□ 0.38
TCF3-220ENST00000611869 ZBTB47Q9UFB7 747 aaPredicted RBP17.45■□□□□ 0.38
TCF3-220ENST00000611869 ROCK2O75116 1388 aaKnown RBP17.45■□□□□ 0.38
TCF3-220ENST00000611869 UACAQ9BZF9 1416 aa17.44■□□□□ 0.38
TCF3-220ENST00000611869 ABCA10Q8WWZ4 1543 aa17.43■□□□□ 0.38
TCF3-220ENST00000611869 KANK1Q14678 1352 aa17.43■□□□□ 0.38
TCF3-220ENST00000611869 B4GALNT3Q6L9W6 998 aa17.43■□□□□ 0.38
TCF3-220ENST00000611869 RSPH4AQ5TD94 716 aa17.42■□□□□ 0.38
TCF3-220ENST00000611869 TNNT2P45379 298 aaPredicted RBP17.42■□□□□ 0.38
TCF3-220ENST00000611869 EFCAB5A4FU69 1503 aa17.42■□□□□ 0.38
TCF3-220ENST00000611869 KIF3BO15066 747 aa17.41■□□□□ 0.38
TCF3-220ENST00000611869 PPP4R2Q9NY27 417 aa17.4■□□□□ 0.38
TCF3-220ENST00000611869 MRC2Q9UBG0 1479 aa17.4■□□□□ 0.38
TCF3-220ENST00000611869 NEUROD2Q15784 382 aa17.4■□□□□ 0.38
TCF3-220ENST00000611869 SPAG9O60271 1321 aaKnown RBP17.39■□□□□ 0.37
TCF3-220ENST00000611869 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.37
TCF3-220ENST00000611869 PRDM2Q13029 1718 aa17.39■□□□□ 0.37
TCF3-220ENST00000611869 ST20-MTHFSA0A0A6YYL1 179 aa17.38■□□□□ 0.37
TCF3-220ENST00000611869 ARID4BQ4LE39 1312 aaPredicted RBP17.34■□□□□ 0.37
TCF3-220ENST00000611869 SAFB2Q14151 953 aaKnown RBP eCLIP17.34■□□□□ 0.37
TCF3-220ENST00000611869 PPM1GO15355 546 aaPredicted RBP17.33■□□□□ 0.36
TCF3-220ENST00000611869 MLECQ14165 292 aa17.33■□□□□ 0.36
TCF3-220ENST00000611869 PRKRIP1Q9H875 184 aaPredicted RBP17.33■□□□□ 0.36
TCF3-220ENST00000611869 IFT140Q96RY7 1462 aa17.33■□□□□ 0.36
TCF3-220ENST00000611869 POGKQ9P215 609 aa17.32■□□□□ 0.36
TCF3-220ENST00000611869 CFAP53Q96M91 514 aa17.32■□□□□ 0.36
TCF3-220ENST00000611869 PCF11O94913 1555 aaKnown RBP17.32■□□□□ 0.36
TCF3-220ENST00000611869 KTN1Q86UP2 1357 aaKnown RBP17.32■□□□□ 0.36
TCF3-220ENST00000611869 URB2Q14146 1524 aaKnown RBP17.31■□□□□ 0.36
TCF3-220ENST00000611869 LAMC3Q9Y6N6 1575 aa17.31■□□□□ 0.36
TCF3-220ENST00000611869 CCDC144AA2RUR9 1427 aa17.3■□□□□ 0.36
TCF3-220ENST00000611869 SNAPC4Q5SXM2 1469 aa17.3■□□□□ 0.36
TCF3-220ENST00000611869 USP47Q96K76 1375 aa17.3■□□□□ 0.36
TCF3-220ENST00000611869 NBR1Q14596 966 aa17.3■□□□□ 0.36
TCF3-220ENST00000611869 PRG4Q92954 1404 aaPredicted RBP17.29■□□□□ 0.36
TCF3-220ENST00000611869 KIF15Q9NS87 1388 aa17.29■□□□□ 0.36
TCF3-220ENST00000611869 HFM1A2PYH4 1435 aa17.28■□□□□ 0.36
TCF3-220ENST00000611869 ANKRD50Q9ULJ7 1429 aa17.28■□□□□ 0.36
TCF3-220ENST00000611869 RALBP1Q15311 655 aa17.27■□□□□ 0.36
TCF3-220ENST00000611869 EHBP1L1Q8N3D4 1523 aa17.27■□□□□ 0.36
TCF3-220ENST00000611869 CDK13Q14004 1512 aaKnown RBP17.26■□□□□ 0.35
TCF3-220ENST00000611869 STK26Q9P289 416 aa17.26■□□□□ 0.35
TCF3-220ENST00000611869 WASHC2AQ641Q2 1341 aa17.24■□□□□ 0.35
TCF3-220ENST00000611869 NUTM2DQ5VT03 806 aaPredicted RBP17.23■□□□□ 0.35
TCF3-220ENST00000611869 PLEKHG5O94827 1062 aa17.23■□□□□ 0.35
TCF3-220ENST00000611869 SRPK2P78362 688 aaKnown RBP17.23■□□□□ 0.35
TCF3-220ENST00000611869 UPF2Q9HAU5 1272 aaKnown RBP17.22■□□□□ 0.35
TCF3-220ENST00000611869 EPRSP07814 1512 aaKnown RBP17.22■□□□□ 0.35
TCF3-220ENST00000611869 KIF7Q2M1P5 1343 aa17.22■□□□□ 0.35
TCF3-220ENST00000611869 NAIPQ13075 1403 aa17.22■□□□□ 0.35
TCF3-220ENST00000611869 MIA2Q96PC5 1412 aa17.22■□□□□ 0.35
TCF3-220ENST00000611869 U2SURPO15042 1029 aaKnown RBP17.22■□□□□ 0.35
TCF3-220ENST00000611869 MORC1Q86VD1 984 aa17.22■□□□□ 0.35
TCF3-220ENST00000611869 NLRP13Q86W25 1043 aa17.21■□□□□ 0.35
TCF3-220ENST00000611869 CCDC7Q96M83 1385 aa17.21■□□□□ 0.35
TCF3-220ENST00000611869 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.21■□□□□ 0.356e-10■■■■■ 33.2
TCF3-220ENST00000611869 FRAT1Q92837 279 aaPredicted RBP17.2■□□□□ 0.34
TCF3-220ENST00000611869 TROQ12816 1431 aaPredicted RBP17.2■□□□□ 0.34
TCF3-220ENST00000611869 CUL7Q14999 1698 aa17.2■□□□□ 0.34
TCF3-220ENST00000611869 NBPF8Q3BBV2 869 aa17.2■□□□□ 0.34
TCF3-220ENST00000611869 KIAA0586Q9BVV6 1533 aa17.2■□□□□ 0.34
TCF3-220ENST00000611869 RBM19Q9Y4C8 960 aaKnown RBP17.2■□□□□ 0.34
TCF3-220ENST00000611869 WDR97A6NE52 1622 aa17.2■□□□□ 0.34
TCF3-220ENST00000611869 WASHC2CQ9Y4E1 1318 aa17.19■□□□□ 0.34
TCF3-220ENST00000611869 PANK3Q9H999 370 aa17.19■□□□□ 0.34
TCF3-220ENST00000611869 TSHZ2Q9NRE2 1034 aa17.18■□□□□ 0.34
TCF3-220ENST00000611869 HECW1Q76N89 1606 aa17.18■□□□□ 0.34
TCF3-220ENST00000611869 MAP3K1Q13233 1512 aa17.18■□□□□ 0.34
TCF3-220ENST00000611869 IQGAP2Q13576 1575 aa17.18■□□□□ 0.34
TCF3-220ENST00000611869 NUDCQ9Y266 331 aa17.18■□□□□ 0.34
TCF3-220ENST00000611869 MAPK8IP3Q9UPT6 1336 aa17.17■□□□□ 0.34
TCF3-220ENST00000611869 C14orf37Q86TY3 774 aa17.17■□□□□ 0.34
TCF3-220ENST00000611869 RCAN3Q9UKA8 241 aa17.17■□□□□ 0.34
TCF3-220ENST00000611869 AFAP1Q8N556 730 aa17.16■□□□□ 0.34
TCF3-220ENST00000611869 ZNF608Q9ULD9 1512 aaPredicted RBP17.16■□□□□ 0.34
TCF3-220ENST00000611869 SUPT6HQ7KZ85 1726 aaKnown RBP17.16■□□□□ 0.34
TCF3-220ENST00000611869 RGS3P49796 1198 aa17.16■□□□□ 0.34
TCF3-220ENST00000611869 SYNJ2O15056 1496 aa17.16■□□□□ 0.34
TCF3-220ENST00000611869 TRAK1Q9UPV9 953 aa17.15■□□□□ 0.34
TCF3-220ENST00000611869 LAS1LQ9Y4W2 734 aaKnown RBP17.15■□□□□ 0.34
TCF3-220ENST00000611869 DAPK1P53355 1430 aa17.14■□□□□ 0.33
TCF3-220ENST00000611869 MYBBP1AQ9BQG0 1328 aaKnown RBP17.13■□□□□ 0.33
TCF3-220ENST00000611869 ZBTB7CA1YPR0 619 aa17.13■□□□□ 0.33
TCF3-220ENST00000611869 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
TCF3-220ENST00000611869 ANP32EQ9BTT0 268 aa17.12■□□□□ 0.33
TCF3-220ENST00000611869 PLB1Q6P1J6 1458 aa17.12■□□□□ 0.33
TCF3-220ENST00000611869 FTSJ3Q8IY81 847 aaKnown RBP17.11■□□□□ 0.33
TCF3-220ENST00000611869 ERICH6BQ5W0A0 696 aa17.11■□□□□ 0.33
TCF3-220ENST00000611869 HSP90AA1P07900 732 aaKnown RBP17.11■□□□□ 0.33
TCF3-220ENST00000611869 C9orf84Q5VXU9 1444 aa17.11■□□□□ 0.33
TCF3-220ENST00000611869 CNTLNQ9NXG0 1405 aa17.11■□□□□ 0.33
TCF3-220ENST00000611869 EIF3AQ14152 1382 aaKnown RBP17.1■□□□□ 0.33
TCF3-220ENST00000611869 CYB5RLQ6IPT4 315 aa17.1■□□□□ 0.33
TCF3-220ENST00000611869 CCDC146Q8IYE0 955 aa17.1■□□□□ 0.33
TCF3-220ENST00000611869 ZBED9Q6R2W3 1325 aa17.09■□□□□ 0.33
TCF3-220ENST00000611869 ARHGAP5Q13017 1502 aa17.09■□□□□ 0.33
TCF3-220ENST00000611869 GRIN2AQ12879 1464 aa17.08■□□□□ 0.32
TCF3-220ENST00000611869 SOX12O15370 315 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms