RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 ATP10AO60312 1499 aa25.11■■□□□ 1.61
SSBP4-214ENST00000607020 HECW1Q76N89 1606 aa25.1■■□□□ 1.61
SSBP4-214ENST00000607020 ARHGEF12Q9NZN5 1544 aa25.07■■□□□ 1.6
SSBP4-214ENST00000607020 SIGLEC1Q9BZZ2 1709 aa25.06■■□□□ 1.6
SSBP4-214ENST00000607020 C9orf84Q5VXU9 1444 aa25.05■■□□□ 1.6
SSBP4-214ENST00000607020 CDK11AQ9UQ88 783 aaPredicted RBP25.05■■□□□ 1.6
SSBP4-214ENST00000607020 CDK13Q14004 1512 aaKnown RBP25.05■■□□□ 1.6
SSBP4-214ENST00000607020 DMRT2Q9Y5R5 561 aa25.04■■□□□ 1.6
SSBP4-214ENST00000607020 CEBPAP49715 358 aaPredicted RBP25.01■■□□□ 1.59
SSBP4-214ENST00000607020 FMN1Q68DA7 1419 aa25■■□□□ 1.59
SSBP4-214ENST00000607020 AFAP1Q8N556 730 aa24.97■■□□□ 1.59
SSBP4-214ENST00000607020 ZNF518AQ6AHZ1 1483 aa24.96■■□□□ 1.59
SSBP4-214ENST00000607020 ATP1B4Q9UN42 357 aaPredicted RBP24.95■■□□□ 1.58
SSBP4-214ENST00000607020 FER1L4A9Z1Z3 1794 aa24.93■■□□□ 1.58
SSBP4-214ENST00000607020 TROQ12816 1431 aaPredicted RBP24.93■■□□□ 1.58
SSBP4-214ENST00000607020 UHRF1BP1Q6BDS2 1440 aa24.91■■□□□ 1.58
SSBP4-214ENST00000607020 UBTFP17480 764 aaKnown RBP24.9■■□□□ 1.58
SSBP4-214ENST00000607020 KDM5CP41229 1560 aa24.88■■□□□ 1.57
SSBP4-214ENST00000607020 ARHGAP35Q9NRY4 1499 aa24.88■■□□□ 1.57
SSBP4-214ENST00000607020 PREX1Q8TCU6 1659 aa24.87■■□□□ 1.57
SSBP4-214ENST00000607020 PTPRTO14522 1441 aa24.86■■□□□ 1.57
SSBP4-214ENST00000607020 MLH3Q9UHC1 1453 aa24.86■■□□□ 1.57
SSBP4-214ENST00000607020 CLIP1P30622 1438 aa24.86■■□□□ 1.57
SSBP4-214ENST00000607020 REREQ9P2R6 1566 aa24.84■■□□□ 1.57
SSBP4-214ENST00000607020 MYT1LQ9UL68 1186 aa24.84■■□□□ 1.57
SSBP4-214ENST00000607020 ARHGAP5Q13017 1502 aa24.84■■□□□ 1.57
SSBP4-214ENST00000607020 MYO5CQ9NQX4 1742 aa24.82■■□□□ 1.56
SSBP4-214ENST00000607020 KIF14Q15058 1648 aa24.82■■□□□ 1.56
SSBP4-214ENST00000607020 AGLP35573 1532 aa24.81■■□□□ 1.56
SSBP4-214ENST00000607020 DISP3Q9P2K9 1392 aa24.81■■□□□ 1.56
SSBP4-214ENST00000607020 ILDR2Q71H61 639 aa24.81■■□□□ 1.56
SSBP4-214ENST00000607020 SETD1BQ9UPS6 1966 aaKnown RBP24.8■■□□□ 1.56
SSBP4-214ENST00000607020 TRAPPC8Q9Y2L5 1435 aa24.8■■□□□ 1.56
SSBP4-214ENST00000607020 ESF1Q9H501 851 aaKnown RBP24.79■■□□□ 1.56
SSBP4-214ENST00000607020 STRCQ7RTU9 1775 aa24.79■■□□□ 1.56
SSBP4-214ENST00000607020 DIP2CQ9Y2E4 1556 aa24.79■■□□□ 1.56
SSBP4-214ENST00000607020 SOCS7O14512 581 aa24.78■■□□□ 1.56
SSBP4-214ENST00000607020 CNTLNQ9NXG0 1405 aa24.75■■□□□ 1.55
SSBP4-214ENST00000607020 EHMT2Q96KQ7 1210 aa24.74■■□□□ 1.55
SSBP4-214ENST00000607020 IQSEC2Q5JU85 1478 aa24.7■■□□□ 1.54
SSBP4-214ENST00000607020 NCOA1Q15788 1441 aa24.69■■□□□ 1.54
SSBP4-214ENST00000607020 ABCA6Q8N139 1617 aa24.69■■□□□ 1.54
SSBP4-214ENST00000607020 ABCC1P33527 1531 aa24.69■■□□□ 1.54
SSBP4-214ENST00000607020 LTBP4Q8N2S1 1624 aa24.68■■□□□ 1.54
SSBP4-214ENST00000607020 NPATQ14207 1427 aa24.68■■□□□ 1.54
SSBP4-214ENST00000607020 CASKIN1Q8WXD9 1431 aa24.68■■□□□ 1.54
SSBP4-214ENST00000607020 CCDC18Q5T9S5 1454 aa24.65■■□□□ 1.54
SSBP4-214ENST00000607020 C3P01024 1663 aa24.65■■□□□ 1.54
SSBP4-214ENST00000607020 ZMYM3Q14202 1370 aa24.64■■□□□ 1.53
SSBP4-214ENST00000607020 CDC42BPBQ9Y5S2 1711 aa24.64■■□□□ 1.53
SSBP4-214ENST00000607020 PREX2Q70Z35 1606 aa24.61■■□□□ 1.53
SSBP4-214ENST00000607020 SPAG9O60271 1321 aaKnown RBP24.59■■□□□ 1.53
SSBP4-214ENST00000607020 KIDINS220Q9ULH0 1771 aa24.58■■□□□ 1.53
SSBP4-214ENST00000607020 CHIC1Q5VXU3 224 aa24.58■■□□□ 1.53
SSBP4-214ENST00000607020 PKD2Q13563 968 aa24.57■■□□□ 1.52
SSBP4-214ENST00000607020 KIAA1107Q9UPP5 1409 aa24.56■■□□□ 1.52
SSBP4-214ENST00000607020 ZNF777Q9ULD5 760 aaPredicted RBP24.56■■□□□ 1.52
SSBP4-214ENST00000607020 LRRIQ1Q96JM4 1722 aa24.55■■□□□ 1.52
SSBP4-214ENST00000607020 SAMD9LQ8IVG5 1584 aa24.55■■□□□ 1.52
SSBP4-214ENST00000607020 HNRNPMP52272 730 aaKnown RBP eCLIP24.55■■□□□ 1.521e-6■■□□□ 12.6
SSBP4-214ENST00000607020 PPP6R1Q9UPN7 881 aa24.55■■□□□ 1.52
SSBP4-214ENST00000607020 ITSN2Q9NZM3 1697 aa24.55■■□□□ 1.52
SSBP4-214ENST00000607020 NCKAP5LQ9HCH0 1330 aa24.55■■□□□ 1.52
SSBP4-214ENST00000607020 GPATCH8Q9UKJ3 1502 aaKnown RBP24.54■■□□□ 1.52
SSBP4-214ENST00000607020 CAMSAP1Q5T5Y3 1602 aa24.53■■□□□ 1.52
SSBP4-214ENST00000607020 SPATA31D1Q6ZQQ2 1576 aa24.52■■□□□ 1.52
SSBP4-214ENST00000607020 ZNF335Q9H4Z2 1342 aaPredicted RBP24.51■■□□□ 1.51
SSBP4-214ENST00000607020 PLA2R1Q13018 1463 aa24.51■■□□□ 1.51
SSBP4-214ENST00000607020 FYCO1Q9BQS8 1478 aa24.5■■□□□ 1.51
SSBP4-214ENST00000607020 CFDP1Q9UEE9 299 aaPredicted RBP24.49■■□□□ 1.51
SSBP4-214ENST00000607020 PTPRKQ15262 1439 aa24.49■■□□□ 1.51
SSBP4-214ENST00000607020 MROH2AA6NES4 1674 aa24.49■■□□□ 1.51
SSBP4-214ENST00000607020 PLEKHH2Q8IVE3 1493 aa24.48■■□□□ 1.51
SSBP4-214ENST00000607020 UBAP1LF5GYI3 381 aa24.47■■□□□ 1.51
SSBP4-214ENST00000607020 SYCP2Q9BX26 1530 aa24.46■■□□□ 1.51
SSBP4-214ENST00000607020 A2MP01023 1474 aa24.46■■□□□ 1.51
SSBP4-214ENST00000607020 TCOF1Q13428 1488 aaKnown RBP24.46■■□□□ 1.51
SSBP4-214ENST00000607020 GGT6Q6P531 493 aa24.45■■□□□ 1.5
SSBP4-214ENST00000607020 CDC42BPAQ5VT25 1732 aa24.44■■□□□ 1.5
SSBP4-214ENST00000607020 PLXNC1O60486 1568 aa24.43■■□□□ 1.5
SSBP4-214ENST00000607020 ATP7AQ04656 1500 aa24.42■■□□□ 1.5
SSBP4-214ENST00000607020 CCNB3Q8WWL7 1395 aa24.42■■□□□ 1.5
SSBP4-214ENST00000607020 INO80Q9ULG1 1556 aaPredicted RBP24.37■■□□□ 1.49
SSBP4-214ENST00000607020 CEP170BQ9Y4F5 1589 aaPredicted RBP24.37■■□□□ 1.49
SSBP4-214ENST00000607020 ZNF142P52746 1687 aaPredicted RBP24.34■■□□□ 1.49
SSBP4-214ENST00000607020 A2ML1A8K2U0 1454 aa24.34■■□□□ 1.49
SSBP4-214ENST00000607020 RTEL1-TNFRSF6BF6WH68 1400 aa24.34■■□□□ 1.49
SSBP4-214ENST00000607020 SUPT6HQ7KZ85 1726 aaKnown RBP24.33■■□□□ 1.49
SSBP4-214ENST00000607020 DHX29Q7Z478 1369 aaKnown RBP24.33■■□□□ 1.49
SSBP4-214ENST00000607020 MYO3AQ8NEV4 1616 aa24.33■■□□□ 1.49
SSBP4-214ENST00000607020 ZNF644Q9H582 1327 aaPredicted RBP24.33■■□□□ 1.48
SSBP4-214ENST00000607020 MBD5Q9P267 1494 aa24.32■■□□□ 1.48
SSBP4-214ENST00000607020 MTUS2Q5JR59 1369 aa24.32■■□□□ 1.48
SSBP4-214ENST00000607020 CLTCQ00610 1675 aaKnown RBP24.31■■□□□ 1.48
SSBP4-214ENST00000607020 TOM1O60784 492 aa24.28■■□□□ 1.48
SSBP4-214ENST00000607020 FBXO31Q5XUX0 539 aaPredicted RBP24.26■■□□□ 1.47
SSBP4-214ENST00000607020 TNRQ92752 1358 aa24.26■■□□□ 1.47
SSBP4-214ENST00000607020 HSPA1LP34931 641 aa24.25■■□□□ 1.47
SSBP4-214ENST00000607020 RSPH4AQ5TD94 716 aa24.25■■□□□ 1.47
SSBP4-214ENST00000607020 DNMT1P26358 1616 aaKnown RBP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms