RNA–Protein interactions for RNA: ENST00000601011.1

NOTCH3-206, Transcript of notch 3, humanhuman

TSL 5

Gene NOTCH3, Length 3,858 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-206ENST00000601011 SAFB2Q14151 953 aaKnown RBP eCLIP17.27■□□□□ 0.36
NOTCH3-206ENST00000601011 B4GALNT3Q6L9W6 998 aa17.26■□□□□ 0.35
NOTCH3-206ENST00000601011 PLB1Q6P1J6 1458 aa17.25■□□□□ 0.35
NOTCH3-206ENST00000601011 RTL5Q5HYW3 569 aaPredicted RBP17.24■□□□□ 0.35
NOTCH3-206ENST00000601011 WASHC2AQ641Q2 1341 aa17.24■□□□□ 0.35
NOTCH3-206ENST00000601011 GGT6Q6P531 493 aa17.23■□□□□ 0.35
NOTCH3-206ENST00000601011 FYCO1Q9BQS8 1478 aa17.23■□□□□ 0.35
NOTCH3-206ENST00000601011 GRIN2BQ13224 1484 aa17.22■□□□□ 0.35
NOTCH3-206ENST00000601011 ST20-MTHFSA0A0A6YYL1 179 aa17.22■□□□□ 0.35
NOTCH3-206ENST00000601011 MLECQ14165 292 aa17.21■□□□□ 0.35
NOTCH3-206ENST00000601011 NEUROD2Q15784 382 aa17.21■□□□□ 0.35
NOTCH3-206ENST00000601011 RTN4Q9NQC3 1192 aaKnown RBP17.21■□□□□ 0.35
NOTCH3-206ENST00000601011 CARMIL2Q6F5E8 1435 aa17.2■□□□□ 0.34
NOTCH3-206ENST00000601011 STAG3Q9UJ98 1225 aa17.2■□□□□ 0.34
NOTCH3-206ENST00000601011 MRC2Q9UBG0 1479 aa17.2■□□□□ 0.34
NOTCH3-206ENST00000601011 NAIPQ13075 1403 aa17.2■□□□□ 0.34
NOTCH3-206ENST00000601011 PTPRGP23470 1445 aa17.19■□□□□ 0.34
NOTCH3-206ENST00000601011 AFAP1Q8N556 730 aa17.18■□□□□ 0.34
NOTCH3-206ENST00000601011 RBM19Q9Y4C8 960 aaKnown RBP17.17■□□□□ 0.34
NOTCH3-206ENST00000601011 MAPKBP1O60336 1514 aa17.16■□□□□ 0.34
NOTCH3-206ENST00000601011 UACAQ9BZF9 1416 aa17.15■□□□□ 0.34
NOTCH3-206ENST00000601011 EPRSP07814 1512 aaKnown RBP17.15■□□□□ 0.34
NOTCH3-206ENST00000601011 CCDC136Q96JN2 1154 aa17.15■□□□□ 0.34
NOTCH3-206ENST00000601011 SLC24A1O60721 1099 aa17.13■□□□□ 0.33
NOTCH3-206ENST00000601011 TIMELESSQ9UNS1 1208 aa17.13■□□□□ 0.33
NOTCH3-206ENST00000601011 LAMC3Q9Y6N6 1575 aa17.12■□□□□ 0.33
NOTCH3-206ENST00000601011 KIF3BO15066 747 aa17.12■□□□□ 0.33
NOTCH3-206ENST00000601011 NBPF1Q3BBV0 1214 aa17.12■□□□□ 0.33
NOTCH3-206ENST00000601011 ANKRD30AQ9BXX3 1397 aa17.11■□□□□ 0.33
NOTCH3-206ENST00000601011 EIF5BO60841 1220 aaKnown RBP17.11■□□□□ 0.33
NOTCH3-206ENST00000601011 KIF21AQ7Z4S6 1674 aa17.11■□□□□ 0.33
NOTCH3-206ENST00000601011 CANXP27824 592 aaKnown RBP17.1■□□□□ 0.33
NOTCH3-206ENST00000601011 THOC2Q8NI27 1593 aaKnown RBP17.09■□□□□ 0.33
NOTCH3-206ENST00000601011 KIF7Q2M1P5 1343 aa17.09■□□□□ 0.33
NOTCH3-206ENST00000601011 HFM1A2PYH4 1435 aa17.09■□□□□ 0.33
NOTCH3-206ENST00000601011 PRKRIP1Q9H875 184 aaPredicted RBP17.09■□□□□ 0.33
NOTCH3-206ENST00000601011 STK26Q9P289 416 aa17.07■□□□□ 0.32
NOTCH3-206ENST00000601011 PPM1GO15355 546 aaPredicted RBP17.07■□□□□ 0.32
NOTCH3-206ENST00000601011 ROCK2O75116 1388 aaKnown RBP17.05■□□□□ 0.32
NOTCH3-206ENST00000601011 EFCAB5A4FU69 1503 aa17.05■□□□□ 0.32
NOTCH3-206ENST00000601011 IQGAP2Q13576 1575 aa17.04■□□□□ 0.32
NOTCH3-206ENST00000601011 WDR43Q15061 677 aaKnown RBP eCLIP17.04■□□□□ 0.32
NOTCH3-206ENST00000601011 DAXXQ9UER7 740 aaPredicted RBP17.04■□□□□ 0.32
NOTCH3-206ENST00000601011 ARHGEF11O15085 1522 aa17.04■□□□□ 0.32
NOTCH3-206ENST00000601011 CCER2I3L3R5 266 aa17.03■□□□□ 0.32
NOTCH3-206ENST00000601011 KIF15Q9NS87 1388 aa17.03■□□□□ 0.32
NOTCH3-206ENST00000601011 IFT140Q96RY7 1462 aa17.03■□□□□ 0.32
NOTCH3-206ENST00000601011 CYB5RLQ6IPT4 315 aa17.02■□□□□ 0.32
NOTCH3-206ENST00000601011 USP47Q96K76 1375 aa17.02■□□□□ 0.31
NOTCH3-206ENST00000601011 EFCAB2Q5VUJ9 269 aa17.02■□□□□ 0.31
NOTCH3-206ENST00000601011 ANKRD50Q9ULJ7 1429 aa17.01■□□□□ 0.31
NOTCH3-206ENST00000601011 KNSTRNQ9Y448 316 aa17■□□□□ 0.31
NOTCH3-206ENST00000601011 ABCC5O15440 1437 aa17■□□□□ 0.31
NOTCH3-206ENST00000601011 MAGI3Q5TCQ9 1506 aa17■□□□□ 0.31
NOTCH3-206ENST00000601011 GRIN2AQ12879 1464 aa17■□□□□ 0.31
NOTCH3-206ENST00000601011 DAPK1P53355 1430 aa17■□□□□ 0.31
NOTCH3-206ENST00000601011 ESF1Q9H501 851 aaKnown RBP17■□□□□ 0.31
NOTCH3-206ENST00000601011 SOX12O15370 315 aa16.99■□□□□ 0.31
NOTCH3-206ENST00000601011 SPAG9O60271 1321 aaKnown RBP16.98■□□□□ 0.31
NOTCH3-206ENST00000601011 KIAA0586Q9BVV6 1533 aa16.98■□□□□ 0.31
NOTCH3-206ENST00000601011 ARXQ96QS3 562 aa16.97■□□□□ 0.31
NOTCH3-206ENST00000601011 PTPN23Q9H3S7 1636 aa16.97■□□□□ 0.31
NOTCH3-206ENST00000601011 CCDC146Q8IYE0 955 aa16.96■□□□□ 0.31
NOTCH3-206ENST00000601011 ARID4BQ4LE39 1312 aaPredicted RBP16.96■□□□□ 0.31
NOTCH3-206ENST00000601011 CCDC7Q96M83 1385 aa16.96■□□□□ 0.31
NOTCH3-206ENST00000601011 CUL7Q14999 1698 aa16.96■□□□□ 0.3
NOTCH3-206ENST00000601011 EHBP1L1Q8N3D4 1523 aa16.95■□□□□ 0.3
NOTCH3-206ENST00000601011 PLIN1O60240 522 aa16.95■□□□□ 0.3
NOTCH3-206ENST00000601011 TROQ12816 1431 aaPredicted RBP16.94■□□□□ 0.3
NOTCH3-206ENST00000601011 PANK3Q9H999 370 aa16.94■□□□□ 0.3
NOTCH3-206ENST00000601011 TRAK1Q9UPV9 953 aa16.94■□□□□ 0.3
NOTCH3-206ENST00000601011 NUP153P49790 1475 aaKnown RBP16.93■□□□□ 0.3
NOTCH3-206ENST00000601011 SUPT6HQ7KZ85 1726 aaKnown RBP16.93■□□□□ 0.3
NOTCH3-206ENST00000601011 NUTM2FA1L443 756 aa16.93■□□□□ 0.3
NOTCH3-206ENST00000601011 ANP32AP39687 249 aaKnown RBP16.92■□□□□ 0.3
NOTCH3-206ENST00000601011 TMEM132EQ6IEE7 984 aa16.9■□□□□ 0.3
NOTCH3-206ENST00000601011 ANKRD30BQ9BXX2 1392 aa16.89■□□□□ 0.29
NOTCH3-206ENST00000601011 DEKP35659 375 aaKnown RBP16.89■□□□□ 0.29
NOTCH3-206ENST00000601011 LAS1LQ9Y4W2 734 aaKnown RBP16.89■□□□□ 0.29
NOTCH3-206ENST00000601011 C9orf84Q5VXU9 1444 aa16.89■□□□□ 0.29
NOTCH3-206ENST00000601011 CCDC144AA2RUR9 1427 aa16.88■□□□□ 0.29
NOTCH3-206ENST00000601011 TMF1P82094 1093 aa16.88■□□□□ 0.29
NOTCH3-206ENST00000601011 FRAT1Q92837 279 aaPredicted RBP16.88■□□□□ 0.29
NOTCH3-206ENST00000601011 HECW1Q76N89 1606 aa16.88■□□□□ 0.29
NOTCH3-206ENST00000601011 ZBTB7CA1YPR0 619 aa16.88■□□□□ 0.29
NOTCH3-206ENST00000601011 RAPGEF3O95398 923 aa16.87■□□□□ 0.29
NOTCH3-206ENST00000601011 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.87■□□□□ 0.29
NOTCH3-206ENST00000601011 MAP3K1Q13233 1512 aa16.86■□□□□ 0.29
NOTCH3-206ENST00000601011 RGS3P49796 1198 aa16.86■□□□□ 0.29
NOTCH3-206ENST00000601011 CAMSAP2Q08AD1 1489 aa16.86■□□□□ 0.29
NOTCH3-206ENST00000601011 CDCA7LQ96GN5 454 aa16.86■□□□□ 0.29
NOTCH3-206ENST00000601011 RRP7AQ9Y3A4 280 aaKnown RBP16.86■□□□□ 0.29
NOTCH3-206ENST00000601011 NCOA1Q15788 1441 aa16.85■□□□□ 0.29
NOTCH3-206ENST00000601011 KDM6BO15054 1643 aa16.85■□□□□ 0.29
NOTCH3-206ENST00000601011 U2SURPO15042 1029 aaKnown RBP16.85■□□□□ 0.29
NOTCH3-206ENST00000601011 SYNJ2O15056 1496 aa16.85■□□□□ 0.29
NOTCH3-206ENST00000601011 CFAP70Q5T0N1 1121 aa16.84■□□□□ 0.29
NOTCH3-206ENST00000601011 CTTNBP2Q8WZ74 1663 aa16.84■□□□□ 0.29
NOTCH3-206ENST00000601011 DISP1Q96F81 1524 aa16.84■□□□□ 0.29
NOTCH3-206ENST00000601011 SKAP1Q86WV1 359 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms