RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 PREX1Q8TCU6 1659 aa14.33□□□□□ -0.12
TRIM28-214ENST00000600840 ZMYM4Q5VZL5 1548 aa14.32□□□□□ -0.12
TRIM28-214ENST00000600840 POGZQ7Z3K3 1410 aa14.32□□□□□ -0.12
TRIM28-214ENST00000600840 AKNAQ7Z591 1439 aa14.32□□□□□ -0.12
TRIM28-214ENST00000600840 CDK13Q14004 1512 aaKnown RBP14.31□□□□□ -0.12
TRIM28-214ENST00000600840 ARHGAP35Q9NRY4 1499 aa14.31□□□□□ -0.12
TRIM28-214ENST00000600840 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.3□□□□□ -0.12
TRIM28-214ENST00000600840 CFAP74Q9C0B2 1584 aa14.3□□□□□ -0.12
TRIM28-214ENST00000600840 HECW1Q76N89 1606 aa14.3□□□□□ -0.12
TRIM28-214ENST00000600840 PLEKHD1A6NEE1 506 aa14.29□□□□□ -0.12
TRIM28-214ENST00000600840 CEBPAP49715 358 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-214ENST00000600840 ARHGEF12Q9NZN5 1544 aa14.26□□□□□ -0.13
TRIM28-214ENST00000600840 LOC105371045A0A1W2PR82 267 aa14.26□□□□□ -0.13
TRIM28-214ENST00000600840 LRRIQ1Q96JM4 1722 aa14.25□□□□□ -0.13
TRIM28-214ENST00000600840 ATP1B4Q9UN42 357 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-214ENST00000600840 MAGI2Q86UL8 1455 aa14.23□□□□□ -0.13
TRIM28-214ENST00000600840 FMN1Q68DA7 1419 aa14.21□□□□□ -0.13
TRIM28-214ENST00000600840 SCAPERQ9BY12 1400 aa14.2□□□□□ -0.14
TRIM28-214ENST00000600840 KIF14Q15058 1648 aa14.19□□□□□ -0.14
TRIM28-214ENST00000600840 LTBP4Q8N2S1 1624 aa14.19□□□□□ -0.14
TRIM28-214ENST00000600840 UHRF1BP1Q6BDS2 1440 aa14.19□□□□□ -0.14
TRIM28-214ENST00000600840 ATP10AO60312 1499 aa14.18□□□□□ -0.14
TRIM28-214ENST00000600840 C9orf84Q5VXU9 1444 aa14.18□□□□□ -0.14
TRIM28-214ENST00000600840 DMRT2Q9Y5R5 561 aa14.18□□□□□ -0.14
TRIM28-214ENST00000600840 PLCH2O75038 1416 aa14.17□□□□□ -0.14
TRIM28-214ENST00000600840 C3P01024 1663 aa14.17□□□□□ -0.14
TRIM28-214ENST00000600840 PTPRTO14522 1441 aa14.15□□□□□ -0.14
TRIM28-214ENST00000600840 MYO5CQ9NQX4 1742 aa14.14□□□□□ -0.15
TRIM28-214ENST00000600840 SETD1BQ9UPS6 1966 aaKnown RBP14.14□□□□□ -0.15
TRIM28-214ENST00000600840 TROQ12816 1431 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-214ENST00000600840 CASKIN1Q8WXD9 1431 aa14.11□□□□□ -0.15
TRIM28-214ENST00000600840 CDC42BPBQ9Y5S2 1711 aa14.1□□□□□ -0.15
TRIM28-214ENST00000600840 DIP2CQ9Y2E4 1556 aa14.1□□□□□ -0.15
TRIM28-214ENST00000600840 CDK11AQ9UQ88 783 aaPredicted RBP14.1□□□□□ -0.15
TRIM28-214ENST00000600840 IQSEC2Q5JU85 1478 aa14.1□□□□□ -0.15
TRIM28-214ENST00000600840 EFCAB2Q5VUJ9 269 aa14.09□□□□□ -0.15
TRIM28-214ENST00000600840 ABCA6Q8N139 1617 aa14.08□□□□□ -0.15
TRIM28-214ENST00000600840 KDM5CP41229 1560 aa14.08□□□□□ -0.16
TRIM28-214ENST00000600840 NCOA1Q15788 1441 aa14.07□□□□□ -0.16
TRIM28-214ENST00000600840 ARHGAP5Q13017 1502 aa14.07□□□□□ -0.16
TRIM28-214ENST00000600840 AFAP1Q8N556 730 aa14.07□□□□□ -0.16
TRIM28-214ENST00000600840 CLIP1P30622 1438 aa14.07□□□□□ -0.16
TRIM28-214ENST00000600840 ZNF518AQ6AHZ1 1483 aa14.06□□□□□ -0.16
TRIM28-214ENST00000600840 CAMSAP1Q5T5Y3 1602 aa14.05□□□□□ -0.16
TRIM28-214ENST00000600840 CDC42BPAQ5VT25 1732 aa14.04□□□□□ -0.16
TRIM28-214ENST00000600840 MYT1LQ9UL68 1186 aa14.04□□□□□ -0.16
TRIM28-214ENST00000600840 ZNF335Q9H4Z2 1342 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-214ENST00000600840 CEP162Q5TB80 1403 aa14.04□□□□□ -0.16
TRIM28-214ENST00000600840 CCDC18Q5T9S5 1454 aa14.04□□□□□ -0.16
TRIM28-214ENST00000600840 REREQ9P2R6 1566 aa14.04□□□□□ -0.16
TRIM28-214ENST00000600840 PREX2Q70Z35 1606 aa14.04□□□□□ -0.16
TRIM28-214ENST00000600840 UBAP1LF5GYI3 381 aa14.03□□□□□ -0.16
TRIM28-214ENST00000600840 TRAPPC8Q9Y2L5 1435 aa14.03□□□□□ -0.16
TRIM28-214ENST00000600840 FYCO1Q9BQS8 1478 aa14.03□□□□□ -0.16
TRIM28-214ENST00000600840 MED1Q15648 1581 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-214ENST00000600840 NCKAP5LQ9HCH0 1330 aa14□□□□□ -0.17
TRIM28-214ENST00000600840 ABCC1P33527 1531 aa14□□□□□ -0.17
TRIM28-214ENST00000600840 AGLP35573 1532 aa14□□□□□ -0.17
TRIM28-214ENST00000600840 ITSN2Q9NZM3 1697 aa13.99□□□□□ -0.17
TRIM28-214ENST00000600840 ESF1Q9H501 851 aaKnown RBP13.98□□□□□ -0.17
TRIM28-214ENST00000600840 KIDINS220Q9ULH0 1771 aa13.98□□□□□ -0.17
TRIM28-214ENST00000600840 SUPT6HQ7KZ85 1726 aaKnown RBP13.98□□□□□ -0.17
TRIM28-214ENST00000600840 MLH3Q9UHC1 1453 aa13.97□□□□□ -0.17
TRIM28-214ENST00000600840 SAMD9LQ8IVG5 1584 aa13.96□□□□□ -0.17
TRIM28-214ENST00000600840 GPATCH8Q9UKJ3 1502 aaKnown RBP13.96□□□□□ -0.17
TRIM28-214ENST00000600840 MROH2AA6NES4 1674 aa13.96□□□□□ -0.17
TRIM28-214ENST00000600840 MYO3AQ8NEV4 1616 aa13.96□□□□□ -0.17
TRIM28-214ENST00000600840 ZNF777Q9ULD5 760 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-214ENST00000600840 ZNF142P52746 1687 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-214ENST00000600840 HSPA1LP34931 641 aa13.94□□□□□ -0.18
TRIM28-214ENST00000600840 CNTLNQ9NXG0 1405 aa13.94□□□□□ -0.18
TRIM28-214ENST00000600840 SCAF1Q9H7N4 1312 aaKnown RBP13.93□□□□□ -0.18
TRIM28-214ENST00000600840 NPATQ14207 1427 aa13.93□□□□□ -0.18
TRIM28-214ENST00000600840 HNRNPMP52272 730 aaKnown RBP eCLIP13.93□□□□□ -0.18
TRIM28-214ENST00000600840 CLTCQ00610 1675 aaKnown RBP13.93□□□□□ -0.18
TRIM28-214ENST00000600840 SYCP2Q9BX26 1530 aa13.92□□□□□ -0.18
TRIM28-214ENST00000600840 PIP4K2BP78356 416 aa13.91□□□□□ -0.18
TRIM28-214ENST00000600840 ZMYM3Q14202 1370 aa13.91□□□□□ -0.18
TRIM28-214ENST00000600840 CEP170BQ9Y4F5 1589 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-214ENST00000600840 PLA2R1Q13018 1463 aa13.9□□□□□ -0.18
TRIM28-214ENST00000600840 TCOF1Q13428 1488 aaKnown RBP13.9□□□□□ -0.18
TRIM28-214ENST00000600840 ZNF644Q9H582 1327 aaPredicted RBP13.9□□□□□ -0.19
TRIM28-214ENST00000600840 MTUS2Q5JR59 1369 aa13.89□□□□□ -0.19
TRIM28-214ENST00000600840 TIAM1Q13009 1591 aa13.88□□□□□ -0.19
TRIM28-214ENST00000600840 CCNB3Q8WWL7 1395 aa13.88□□□□□ -0.19
TRIM28-214ENST00000600840 CFDP1Q9UEE9 299 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-214ENST00000600840 PKD2Q13563 968 aa13.87□□□□□ -0.19
TRIM28-214ENST00000600840 PPP6R1Q9UPN7 881 aa13.86□□□□□ -0.19
TRIM28-214ENST00000600840 VPS8Q8N3P4 1428 aa13.86□□□□□ -0.19
TRIM28-214ENST00000600840 PTPRKQ15262 1439 aa13.85□□□□□ -0.19
TRIM28-214ENST00000600840 KIAA1107Q9UPP5 1409 aa13.85□□□□□ -0.19
TRIM28-214ENST00000600840 SPAG9O60271 1321 aaKnown RBP13.85□□□□□ -0.19
TRIM28-214ENST00000600840 EHBP1L1Q8N3D4 1523 aa13.85□□□□□ -0.19
TRIM28-214ENST00000600840 POLR1AO95602 1720 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-214ENST00000600840 INO80Q9ULG1 1556 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-214ENST00000600840 ALKQ9UM73 1620 aa13.84□□□□□ -0.19
TRIM28-214ENST00000600840 PHF23Q9BUL5 403 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-214ENST00000600840 ATP7AQ04656 1500 aa13.84□□□□□ -0.19
TRIM28-214ENST00000600840 MBD5Q9P267 1494 aa13.83□□□□□ -0.2
TRIM28-214ENST00000600840 NEURL4Q96JN8 1562 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms