RNA–Protein interactions for RNA: ENST00000598772.1

HERC3-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 2

Gene HERC3, Length 326 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-213ENST00000598772 AKNAQ7Z591 1439 aa8□□□□□ -1.13
HERC3-213ENST00000598772 MYT1LQ9UL68 1186 aa7.99□□□□□ -1.13
HERC3-213ENST00000598772 SRCAPQ6ZRS2 3230 aa7.99□□□□□ -1.13
HERC3-213ENST00000598772 IGF1RP08069 1367 aa7.98□□□□□ -1.13
HERC3-213ENST00000598772 FER1L4A9Z1Z3 1794 aa7.97□□□□□ -1.13
HERC3-213ENST00000598772 FAM9AQ8IZU1 332 aaPredicted RBP7.96□□□□□ -1.14
HERC3-213ENST00000598772 DISP1Q96F81 1524 aa7.96□□□□□ -1.14
HERC3-213ENST00000598772 DENND4BO75064 1496 aaPredicted RBP7.95□□□□□ -1.14
HERC3-213ENST00000598772 CARMIL1Q5VZK9 1371 aa7.95□□□□□ -1.14
HERC3-213ENST00000598772 IQGAP2Q13576 1575 aa7.94□□□□□ -1.14
HERC3-213ENST00000598772 SETD1BQ9UPS6 1966 aaKnown RBP7.94□□□□□ -1.14
HERC3-213ENST00000598772 UPF1Q92900 1129 aaKnown RBP eCLIP7.94□□□□□ -1.14
HERC3-213ENST00000598772 ARHGEF40Q8TER5 1519 aa7.93□□□□□ -1.14
HERC3-213ENST00000598772 TTC37Q6PGP7 1564 aa7.93□□□□□ -1.14
HERC3-213ENST00000598772 NCOA1Q15788 1441 aa7.93□□□□□ -1.14
HERC3-213ENST00000598772 NEO1Q92859 1461 aa7.93□□□□□ -1.14
HERC3-213ENST00000598772 FRMPD1Q5SYB0 1578 aa7.93□□□□□ -1.14
HERC3-213ENST00000598772 TRIM52Q96A61 297 aa7.92□□□□□ -1.14
HERC3-213ENST00000598772 BIVM-ERCC5R4GMW8 1640 aa7.92□□□□□ -1.14
HERC3-213ENST00000598772 P3H3Q8IVL6 736 aa7.91□□□□□ -1.14
HERC3-213ENST00000598772 ZFYVE16Q7Z3T8 1539 aa7.9□□□□□ -1.14
HERC3-213ENST00000598772 KIF27Q86VH2 1401 aa7.89□□□□□ -1.15
HERC3-213ENST00000598772 PKD2Q13563 968 aa7.89□□□□□ -1.15
HERC3-213ENST00000598772 SETD1AO15047 1707 aaKnown RBP7.89□□□□□ -1.15
HERC3-213ENST00000598772 SIGLEC1Q9BZZ2 1709 aa7.89□□□□□ -1.15
HERC3-213ENST00000598772 CAMSAP1Q5T5Y3 1602 aa7.89□□□□□ -1.15
HERC3-213ENST00000598772 TRAPPC8Q9Y2L5 1435 aa7.88□□□□□ -1.15
HERC3-213ENST00000598772 CHRDL2Q6WN34 429 aa7.88□□□□□ -1.15
HERC3-213ENST00000598772 KIAA0556O60303 1618 aa7.87□□□□□ -1.15
HERC3-213ENST00000598772 ARHGEF12Q9NZN5 1544 aa7.87□□□□□ -1.15
HERC3-213ENST00000598772 EFCAB5A4FU69 1503 aa7.86□□□□□ -1.15
HERC3-213ENST00000598772 ATP10AO60312 1499 aa7.86□□□□□ -1.15
HERC3-213ENST00000598772 PTPRKQ15262 1439 aa7.86□□□□□ -1.15
HERC3-213ENST00000598772 FHOD3Q2V2M9 1422 aa7.86□□□□□ -1.15
HERC3-213ENST00000598772 RNF216Q9NWF9 866 aaPredicted RBP7.85□□□□□ -1.15
HERC3-213ENST00000598772 ATP10BO94823 1461 aa7.85□□□□□ -1.15
HERC3-213ENST00000598772 ABCA9Q8IUA7 1624 aa7.85□□□□□ -1.15
HERC3-213ENST00000598772 RBM33Q96EV2 1170 aaKnown RBP7.84□□□□□ -1.15
HERC3-213ENST00000598772 SPINK5Q9NQ38 1064 aaPredicted RBP7.84□□□□□ -1.15
HERC3-213ENST00000598772 UGGT2Q9NYU1 1516 aa7.83□□□□□ -1.16
HERC3-213ENST00000598772 C9orf84Q5VXU9 1444 aa7.83□□□□□ -1.16
HERC3-213ENST00000598772 ABCA8O94911 1581 aa7.83□□□□□ -1.16
HERC3-213ENST00000598772 RICTORQ6R327 1708 aa7.83□□□□□ -1.16
HERC3-213ENST00000598772 HECW1Q76N89 1606 aa7.82□□□□□ -1.16
HERC3-213ENST00000598772 PLEKHD1A6NEE1 506 aa7.82□□□□□ -1.16
HERC3-213ENST00000598772 SCAPERQ9BY12 1400 aa7.82□□□□□ -1.16
HERC3-213ENST00000598772 ZRANB1Q9UGI0 708 aa7.82□□□□□ -1.16
HERC3-213ENST00000598772 MAGI2Q86UL8 1455 aa7.81□□□□□ -1.16
HERC3-213ENST00000598772 SUPT5HO00267 1087 aaKnown RBP7.81□□□□□ -1.16
HERC3-213ENST00000598772 IFFO2Q5TF58 517 aa7.81□□□□□ -1.16
HERC3-213ENST00000598772 C3P01024 1663 aa7.8□□□□□ -1.16
HERC3-213ENST00000598772 MEX3CQ5U5Q3 659 aaKnown RBP7.8□□□□□ -1.16
HERC3-213ENST00000598772 SHANK2Q9UPX8 1470 aa7.8□□□□□ -1.16
HERC3-213ENST00000598772 AFAP1Q8N556 730 aa7.79□□□□□ -1.16
HERC3-213ENST00000598772 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.79□□□□□ -1.16
HERC3-213ENST00000598772 GOLGA3Q08378 1498 aa7.78□□□□□ -1.16
HERC3-213ENST00000598772 CPS1P31327 1500 aa7.78□□□□□ -1.16
HERC3-213ENST00000598772 ZMYM4Q5VZL5 1548 aa7.78□□□□□ -1.16
HERC3-213ENST00000598772 NUTM2BA6NNL0 878 aaPredicted RBP7.77□□□□□ -1.17
HERC3-213ENST00000598772 NUTM2EB1AL46 878 aaPredicted RBP7.77□□□□□ -1.17
HERC3-213ENST00000598772 CAPN15O75808 1086 aa7.77□□□□□ -1.17
HERC3-213ENST00000598772 RXRBP28702 533 aa7.77□□□□□ -1.17
HERC3-213ENST00000598772 RANGAP1P46060 587 aaPredicted RBP7.77□□□□□ -1.17
HERC3-213ENST00000598772 NUTM2DQ5VT03 806 aaPredicted RBP7.77□□□□□ -1.17
HERC3-213ENST00000598772 NUTM2AQ8IVF1 878 aaPredicted RBP7.77□□□□□ -1.17
HERC3-213ENST00000598772 ZMYM3Q14202 1370 aa7.75□□□□□ -1.17
HERC3-213ENST00000598772 SUPT6HQ7KZ85 1726 aaKnown RBP7.75□□□□□ -1.17
HERC3-213ENST00000598772 EFCAB2Q5VUJ9 269 aa7.74□□□□□ -1.17
HERC3-213ENST00000598772 ZNF772Q68DY9 489 aaPredicted RBP7.74□□□□□ -1.17
HERC3-213ENST00000598772 ANKLE2Q86XL3 938 aa7.74□□□□□ -1.17
HERC3-213ENST00000598772 RAPGEF2Q9Y4G8 1499 aa7.74□□□□□ -1.17
HERC3-213ENST00000598772 CFAP74Q9C0B2 1584 aa7.73□□□□□ -1.17
HERC3-213ENST00000598772 CNKSR2Q8WXI2 1034 aa7.73□□□□□ -1.17
HERC3-213ENST00000598772 ALKQ9UM73 1620 aa7.73□□□□□ -1.17
HERC3-213ENST00000598772 TCOF1Q13428 1488 aaKnown RBP7.73□□□□□ -1.17
HERC3-213ENST00000598772 PLA2R1Q13018 1463 aa7.72□□□□□ -1.17
HERC3-213ENST00000598772 NPATQ14207 1427 aa7.71□□□□□ -1.17
HERC3-213ENST00000598772 CNTLNQ9NXG0 1405 aa7.71□□□□□ -1.17
HERC3-213ENST00000598772 ATP1B4Q9UN42 357 aaPredicted RBP7.71□□□□□ -1.18
HERC3-213ENST00000598772 GGT6Q6P531 493 aa7.7□□□□□ -1.18
HERC3-213ENST00000598772 SETBP1Q9Y6X0 1596 aa7.69□□□□□ -1.18
HERC3-213ENST00000598772 YY1P25490 414 aa7.69□□□□□ -1.18
HERC3-213ENST00000598772 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.68□□□□□ -1.18
HERC3-213ENST00000598772 LRRC7Q96NW7 1537 aa7.68□□□□□ -1.18
HERC3-213ENST00000598772 CEP170BQ9Y4F5 1589 aaPredicted RBP7.67□□□□□ -1.18
HERC3-213ENST00000598772 THEMISQ8N1K5 641 aaPredicted RBP7.67□□□□□ -1.18
HERC3-213ENST00000598772 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.67□□□□□ -1.18
HERC3-213ENST00000598772 PLCH2O75038 1416 aa7.66□□□□□ -1.18
HERC3-213ENST00000598772 SENP3-EIF4A1A0A087X0R7 540 aa7.65□□□□□ -1.18
HERC3-213ENST00000598772 NPHP4O75161 1426 aaPredicted RBP7.65□□□□□ -1.18
HERC3-213ENST00000598772 FBXO31Q5XUX0 539 aaPredicted RBP7.65□□□□□ -1.18
HERC3-213ENST00000598772 ZNF518AQ6AHZ1 1483 aa7.65□□□□□ -1.18
HERC3-213ENST00000598772 PPP4R3CPQ6ZMV5 832 aa7.65□□□□□ -1.18
HERC3-213ENST00000598772 VWDEQ8N2E2 1590 aa7.65□□□□□ -1.18
HERC3-213ENST00000598772 MYO3AQ8NEV4 1616 aa7.65□□□□□ -1.18
HERC3-213ENST00000598772 EHMT2Q96KQ7 1210 aa7.65□□□□□ -1.18
HERC3-213ENST00000598772 FAM135BQ49AJ0 1406 aa7.64□□□□□ -1.19
HERC3-213ENST00000598772 JCADQ9P266 1359 aa7.64□□□□□ -1.19
HERC3-213ENST00000598772 QTRT2Q9H974 415 aaKnown RBP7.64□□□□□ -1.19
HERC3-213ENST00000598772 RAPGEF6Q8TEU7 1601 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms