RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 ANP32AP39687 249 aaKnown RBP16.66■□□□□ 0.26
USHBP1-207ENST00000597928 JPH4Q96JJ6 628 aa16.66■□□□□ 0.26
USHBP1-207ENST00000597928 FYCO1Q9BQS8 1478 aa16.66■□□□□ 0.26
USHBP1-207ENST00000597928 PLIN1O60240 522 aa16.65■□□□□ 0.26
USHBP1-207ENST00000597928 TNNT2P45379 298 aaPredicted RBP16.64■□□□□ 0.25
USHBP1-207ENST00000597928 ERCC6Q03468 1493 aa16.64■□□□□ 0.25
USHBP1-207ENST00000597928 DAXXQ9UER7 740 aaPredicted RBP16.64■□□□□ 0.25
USHBP1-207ENST00000597928 CCDC7Q96M83 1385 aa16.63■□□□□ 0.25
USHBP1-207ENST00000597928 HFM1A2PYH4 1435 aa16.63■□□□□ 0.25
USHBP1-207ENST00000597928 LAS1LQ9Y4W2 734 aaKnown RBP16.62■□□□□ 0.25
USHBP1-207ENST00000597928 MSH5O43196 834 aa16.61■□□□□ 0.25
USHBP1-207ENST00000597928 NEUROD2Q15784 382 aa16.61■□□□□ 0.25
USHBP1-207ENST00000597928 PRG4Q92954 1404 aaPredicted RBP16.6■□□□□ 0.25
USHBP1-207ENST00000597928 URB2Q14146 1524 aaKnown RBP16.59■□□□□ 0.25
USHBP1-207ENST00000597928 SKAP1Q86WV1 359 aa16.59■□□□□ 0.25
USHBP1-207ENST00000597928 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.25
USHBP1-207ENST00000597928 USP47Q96K76 1375 aa16.58■□□□□ 0.24
USHBP1-207ENST00000597928 ABCA10Q8WWZ4 1543 aa16.57■□□□□ 0.24
USHBP1-207ENST00000597928 AKNAQ7Z591 1439 aa16.57■□□□□ 0.24
USHBP1-207ENST00000597928 PRDM2Q13029 1718 aa16.56■□□□□ 0.24
USHBP1-207ENST00000597928 NBPF1Q3BBV0 1214 aa16.56■□□□□ 0.24
USHBP1-207ENST00000597928 CANXP27824 592 aaKnown RBP16.54■□□□□ 0.24
USHBP1-207ENST00000597928 EXOC6Q8TAG9 804 aa16.54■□□□□ 0.24
USHBP1-207ENST00000597928 DNMBPQ6XZF7 1577 aa16.53■□□□□ 0.24
USHBP1-207ENST00000597928 ROCK2O75116 1388 aaKnown RBP16.53■□□□□ 0.24
USHBP1-207ENST00000597928 CDCA7LQ96GN5 454 aa16.53■□□□□ 0.24
USHBP1-207ENST00000597928 WDR43Q15061 677 aaKnown RBP eCLIP16.52■□□□□ 0.24
USHBP1-207ENST00000597928 CNTLNQ9NXG0 1405 aa16.52■□□□□ 0.23
USHBP1-207ENST00000597928 RTN4Q9NQC3 1192 aaKnown RBP16.52■□□□□ 0.23
USHBP1-207ENST00000597928 NUDCQ9Y266 331 aa16.52■□□□□ 0.23
USHBP1-207ENST00000597928 RGS3P49796 1198 aa16.51■□□□□ 0.23
USHBP1-207ENST00000597928 CCDC146Q8IYE0 955 aa16.5■□□□□ 0.23
USHBP1-207ENST00000597928 ARXQ96QS3 562 aa16.49■□□□□ 0.23
USHBP1-207ENST00000597928 NOP58Q9Y2X3 529 aaKnown RBP16.49■□□□□ 0.23
USHBP1-207ENST00000597928 ZBED9Q6R2W3 1325 aa16.49■□□□□ 0.23
USHBP1-207ENST00000597928 ZNF608Q9ULD9 1512 aaPredicted RBP16.49■□□□□ 0.23
USHBP1-207ENST00000597928 ANKRD30AQ9BXX3 1397 aa16.49■□□□□ 0.23
USHBP1-207ENST00000597928 NUTM2DQ5VT03 806 aaPredicted RBP16.49■□□□□ 0.23
USHBP1-207ENST00000597928 PAK3O75914 559 aaPredicted RBP16.48■□□□□ 0.23
USHBP1-207ENST00000597928 EPRSP07814 1512 aaKnown RBP16.47■□□□□ 0.23
USHBP1-207ENST00000597928 SAFB2Q14151 953 aaKnown RBP eCLIP16.47■□□□□ 0.23
USHBP1-207ENST00000597928 PANK3Q9H999 370 aa16.47■□□□□ 0.23
USHBP1-207ENST00000597928 RCAN3Q9UKA8 241 aa16.47■□□□□ 0.23
USHBP1-207ENST00000597928 KNSTRNQ9Y448 316 aa16.46■□□□□ 0.23
USHBP1-207ENST00000597928 PTPN23Q9H3S7 1636 aa16.46■□□□□ 0.23
USHBP1-207ENST00000597928 EFCAB5A4FU69 1503 aa16.45■□□□□ 0.22
USHBP1-207ENST00000597928 SLC4A3P48751 1232 aa16.45■□□□□ 0.22
USHBP1-207ENST00000597928 DEKP35659 375 aaKnown RBP16.44■□□□□ 0.22
USHBP1-207ENST00000597928 PLB1Q6P1J6 1458 aa16.43■□□□□ 0.22
USHBP1-207ENST00000597928 MAP3K1Q13233 1512 aa16.43■□□□□ 0.22
USHBP1-207ENST00000597928 ANKRD30BQ9BXX2 1392 aa16.42■□□□□ 0.22
USHBP1-207ENST00000597928 SNAPC4Q5SXM2 1469 aa16.42■□□□□ 0.22
USHBP1-207ENST00000597928 THOC2Q8NI27 1593 aaKnown RBP16.42■□□□□ 0.22
USHBP1-207ENST00000597928 DAPK1P53355 1430 aa16.42■□□□□ 0.22
USHBP1-207ENST00000597928 PLPPR3Q6T4P5 718 aa16.41■□□□□ 0.22
USHBP1-207ENST00000597928 ABCC5O15440 1437 aa16.41■□□□□ 0.22
USHBP1-207ENST00000597928 FRAT1Q92837 279 aaPredicted RBP16.4■□□□□ 0.22
USHBP1-207ENST00000597928 ANKRD50Q9ULJ7 1429 aa16.4■□□□□ 0.22
USHBP1-207ENST00000597928 SUPT6HQ7KZ85 1726 aaKnown RBP16.38■□□□□ 0.21
USHBP1-207ENST00000597928 EHBP1L1Q8N3D4 1523 aa16.38■□□□□ 0.21
USHBP1-207ENST00000597928 PNISRQ8TF01 805 aaKnown RBP16.38■□□□□ 0.21
USHBP1-207ENST00000597928 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.38■□□□□ 0.21
USHBP1-207ENST00000597928 GRIN2BQ13224 1484 aa16.38■□□□□ 0.21
USHBP1-207ENST00000597928 MAGI3Q5TCQ9 1506 aa16.38■□□□□ 0.21
USHBP1-207ENST00000597928 TMF1P82094 1093 aa16.37■□□□□ 0.21
USHBP1-207ENST00000597928 CARMIL2Q6F5E8 1435 aa16.37■□□□□ 0.21
USHBP1-207ENST00000597928 KIF15Q9NS87 1388 aa16.37■□□□□ 0.21
USHBP1-207ENST00000597928 KTN1Q86UP2 1357 aaKnown RBP16.36■□□□□ 0.21
USHBP1-207ENST00000597928 RRP7AQ9Y3A4 280 aaKnown RBP16.35■□□□□ 0.21
USHBP1-207ENST00000597928 NEFMP07197 916 aa16.35■□□□□ 0.21
USHBP1-207ENST00000597928 CRBNQ96SW2 442 aa16.35■□□□□ 0.21
USHBP1-207ENST00000597928 KDM6BO15054 1643 aa16.35■□□□□ 0.21
USHBP1-207ENST00000597928 NLRP13Q86W25 1043 aa16.35■□□□□ 0.21
USHBP1-207ENST00000597928 GGT6Q6P531 493 aa16.34■□□□□ 0.21
USHBP1-207ENST00000597928 AFAP1Q8N556 730 aa16.34■□□□□ 0.21
USHBP1-207ENST00000597928 MYBBP1AQ9BQG0 1328 aaKnown RBP16.34■□□□□ 0.21
USHBP1-207ENST00000597928 RRP1P56182 461 aaKnown RBP16.33■□□□□ 0.21
USHBP1-207ENST00000597928 KIF3BO15066 747 aa16.33■□□□□ 0.2
USHBP1-207ENST00000597928 PPM1GO15355 546 aaPredicted RBP16.31■□□□□ 0.2
USHBP1-207ENST00000597928 PTPRGP23470 1445 aa16.31■□□□□ 0.2
USHBP1-207ENST00000597928 RALBP1Q15311 655 aa16.31■□□□□ 0.2
USHBP1-207ENST00000597928 BCL2L13Q9BXK5 485 aa16.31■□□□□ 0.2
USHBP1-207ENST00000597928 ADAMTS8Q9UP79 889 aa16.31■□□□□ 0.2
USHBP1-207ENST00000597928 NCOA1Q15788 1441 aa16.3■□□□□ 0.2
USHBP1-207ENST00000597928 CCDC144AA2RUR9 1427 aa16.3■□□□□ 0.2
USHBP1-207ENST00000597928 IQGAP2Q13576 1575 aa16.29■□□□□ 0.2
USHBP1-207ENST00000597928 ARHGEF11O15085 1522 aa16.29■□□□□ 0.2
USHBP1-207ENST00000597928 CFAP43Q8NDM7 1665 aa16.29■□□□□ 0.2
USHBP1-207ENST00000597928 STK26Q9P289 416 aa16.29■□□□□ 0.2
USHBP1-207ENST00000597928 FANCIQ9NVI1 1328 aa16.29■□□□□ 0.2
USHBP1-207ENST00000597928 CLUAP1Q96AJ1 413 aa16.28■□□□□ 0.2
USHBP1-207ENST00000597928 MIA2Q96PC5 1412 aa16.28■□□□□ 0.2
USHBP1-207ENST00000597928 CUL7Q14999 1698 aa16.27■□□□□ 0.2
USHBP1-207ENST00000597928 UGGT2Q9NYU1 1516 aa16.27■□□□□ 0.2
USHBP1-207ENST00000597928 SPRYD3Q8NCJ5 442 aa16.27■□□□□ 0.2
USHBP1-207ENST00000597928 KIAA1107Q9UPP5 1409 aa16.27■□□□□ 0.2
USHBP1-207ENST00000597928 C20orf194Q5TEA3 1177 aa16.27■□□□□ 0.2
USHBP1-207ENST00000597928 IPO9Q96P70 1041 aaKnown RBP16.27■□□□□ 0.2
USHBP1-207ENST00000597928 TRAK1Q9UPV9 953 aa16.27■□□□□ 0.2
USHBP1-207ENST00000597928 PDE4AP27815 886 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms