RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 DMRT2Q9Y5R5 561 aa21.63■■□□□ 1.05
SCAF1-202ENST00000595242 MAGI2Q86UL8 1455 aa21.63■■□□□ 1.05
SCAF1-202ENST00000595242 HECW1Q76N89 1606 aa21.62■■□□□ 1.05
SCAF1-202ENST00000595242 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.61■■□□□ 1.05
SCAF1-202ENST00000595242 PLEKHD1A6NEE1 506 aa21.61■■□□□ 1.05
SCAF1-202ENST00000595242 ARHGEF12Q9NZN5 1544 aa21.59■■□□□ 1.05
SCAF1-202ENST00000595242 CEBPAP49715 358 aaPredicted RBP21.57■■□□□ 1.04
SCAF1-202ENST00000595242 ATP10AO60312 1499 aa21.52■■□□□ 1.04
SCAF1-202ENST00000595242 SCAPERQ9BY12 1400 aa21.51■■□□□ 1.03
SCAF1-202ENST00000595242 C9orf84Q5VXU9 1444 aa21.5■■□□□ 1.03
SCAF1-202ENST00000595242 UHRF1BP1Q6BDS2 1440 aa21.5■■□□□ 1.03
SCAF1-202ENST00000595242 PTPRTO14522 1441 aa21.47■■□□□ 1.03
SCAF1-202ENST00000595242 RANGAP1P46060 587 aaPredicted RBP21.47■■□□□ 1.03
SCAF1-202ENST00000595242 LTBP4Q8N2S1 1624 aa21.46■■□□□ 1.03
SCAF1-202ENST00000595242 PLCH2O75038 1416 aa21.45■■□□□ 1.02
SCAF1-202ENST00000595242 C3P01024 1663 aa21.44■■□□□ 1.02
SCAF1-202ENST00000595242 MYO5CQ9NQX4 1742 aa21.43■■□□□ 1.02
SCAF1-202ENST00000595242 IQSEC2Q5JU85 1478 aa21.42■■□□□ 1.02
SCAF1-202ENST00000595242 CSRNP3Q8WYN3 585 aa21.38■■□□□ 1.01
SCAF1-202ENST00000595242 CDK13Q14004 1512 aaKnown RBP21.38■■□□□ 1.01
SCAF1-202ENST00000595242 EFCAB2Q5VUJ9 269 aa21.36■■□□□ 1.01
SCAF1-202ENST00000595242 ZNF518AQ6AHZ1 1483 aa21.34■■□□□ 1.01
SCAF1-202ENST00000595242 KDM5CP41229 1560 aa21.33■■□□□ 1.01
SCAF1-202ENST00000595242 DIP2CQ9Y2E4 1556 aa21.32■■□□□ 1
SCAF1-202ENST00000595242 AFAP1Q8N556 730 aa21.32■■□□□ 1
SCAF1-202ENST00000595242 MYT1LQ9UL68 1186 aa21.32■■□□□ 1
SCAF1-202ENST00000595242 NCOA1Q15788 1441 aa21.31■■□□□ 1
SCAF1-202ENST00000595242 REREQ9P2R6 1566 aa21.31■■□□□ 1
SCAF1-202ENST00000595242 TRAPPC8Q9Y2L5 1435 aa21.3■■□□□ 1
SCAF1-202ENST00000595242 ESF1Q9H501 851 aaKnown RBP21.29■■□□□ 1
SCAF1-202ENST00000595242 ABCA6Q8N139 1617 aa21.29■■□□□ 1
SCAF1-202ENST00000595242 KIF14Q15058 1648 aa21.27■■□□□ 1
SCAF1-202ENST00000595242 CAMSAP1Q5T5Y3 1602 aa21.26■□□□□ 0.99
SCAF1-202ENST00000595242 ARHGAP5Q13017 1502 aa21.26■□□□□ 0.99
SCAF1-202ENST00000595242 UBAP1LF5GYI3 381 aa21.26■□□□□ 0.99
SCAF1-202ENST00000595242 SUPT6HQ7KZ85 1726 aaKnown RBP21.23■□□□□ 0.99
SCAF1-202ENST00000595242 CDC42BPBQ9Y5S2 1711 aa21.23■□□□□ 0.99
SCAF1-202ENST00000595242 AGLP35573 1532 aa21.23■□□□□ 0.99
SCAF1-202ENST00000595242 MLH3Q9UHC1 1453 aa21.21■□□□□ 0.99
SCAF1-202ENST00000595242 ATP1B4Q9UN42 357 aaPredicted RBP21.21■□□□□ 0.99
SCAF1-202ENST00000595242 ZNF335Q9H4Z2 1342 aaPredicted RBP21.21■□□□□ 0.99
SCAF1-202ENST00000595242 CDK11AQ9UQ88 783 aaPredicted RBP21.2■□□□□ 0.98
SCAF1-202ENST00000595242 CNTLNQ9NXG0 1405 aa21.19■□□□□ 0.98
SCAF1-202ENST00000595242 MROH2AA6NES4 1674 aa21.18■□□□□ 0.98
SCAF1-202ENST00000595242 NCKAP5LQ9HCH0 1330 aa21.18■□□□□ 0.98
SCAF1-202ENST00000595242 KIDINS220Q9ULH0 1771 aa21.17■□□□□ 0.98
SCAF1-202ENST00000595242 ITSN2Q9NZM3 1697 aa21.15■□□□□ 0.98
SCAF1-202ENST00000595242 NPATQ14207 1427 aa21.15■□□□□ 0.98
SCAF1-202ENST00000595242 MED1Q15648 1581 aaPredicted RBP21.14■□□□□ 0.98
SCAF1-202ENST00000595242 TROQ12816 1431 aaPredicted RBP21.12■□□□□ 0.97
SCAF1-202ENST00000595242 EEA1Q15075 1411 aa21.12■□□□□ 0.97
SCAF1-202ENST00000595242 LRRIQ1Q96JM4 1722 aa21.12■□□□□ 0.97
SCAF1-202ENST00000595242 ZNF142P52746 1687 aaPredicted RBP21.12■□□□□ 0.97
SCAF1-202ENST00000595242 FMN1Q68DA7 1419 aa21.12■□□□□ 0.97
SCAF1-202ENST00000595242 ABCC1P33527 1531 aa21.11■□□□□ 0.97
SCAF1-202ENST00000595242 CLIP1P30622 1438 aa21.11■□□□□ 0.97
SCAF1-202ENST00000595242 ZMYM3Q14202 1370 aa21.1■□□□□ 0.97
SCAF1-202ENST00000595242 CHIC1Q5VXU3 224 aa21.1■□□□□ 0.97
SCAF1-202ENST00000595242 PREX2Q70Z35 1606 aa21.1■□□□□ 0.97
SCAF1-202ENST00000595242 MYO3AQ8NEV4 1616 aa21.1■□□□□ 0.97
SCAF1-202ENST00000595242 HSPA1LP34931 641 aa21.09■□□□□ 0.97
SCAF1-202ENST00000595242 PKD2Q13563 968 aa21.09■□□□□ 0.97
SCAF1-202ENST00000595242 CLTCQ00610 1675 aaKnown RBP21.09■□□□□ 0.97
SCAF1-202ENST00000595242 PLA2R1Q13018 1463 aa21.08■□□□□ 0.97
SCAF1-202ENST00000595242 SCAF1Q9H7N4 1312 aaKnown RBP21.07■□□□□ 0.96
SCAF1-202ENST00000595242 TCOF1Q13428 1488 aaKnown RBP21.06■□□□□ 0.96
SCAF1-202ENST00000595242 CEP170BQ9Y4F5 1589 aaPredicted RBP21.06■□□□□ 0.96
SCAF1-202ENST00000595242 PIP4K2BP78356 416 aa21.05■□□□□ 0.96
SCAF1-202ENST00000595242 CDC42BPAQ5VT25 1732 aa21.04■□□□□ 0.96
SCAF1-202ENST00000595242 PPP6R1Q9UPN7 881 aa21.02■□□□□ 0.96
SCAF1-202ENST00000595242 TOM1O60784 492 aa21■□□□□ 0.95
SCAF1-202ENST00000595242 SAMD9LQ8IVG5 1584 aa21■□□□□ 0.95
SCAF1-202ENST00000595242 ARHGAP35Q9NRY4 1499 aa21■□□□□ 0.95
SCAF1-202ENST00000595242 PHF23Q9BUL5 403 aaPredicted RBP20.99■□□□□ 0.95
SCAF1-202ENST00000595242 POLR1AO95602 1720 aaPredicted RBP20.98■□□□□ 0.95
SCAF1-202ENST00000595242 PTPRKQ15262 1439 aa20.98■□□□□ 0.95
SCAF1-202ENST00000595242 CPS1P31327 1500 aa20.95■□□□□ 0.94
SCAF1-202ENST00000595242 DNMT1P26358 1616 aaKnown RBP20.94■□□□□ 0.94
SCAF1-202ENST00000595242 UBTFP17480 764 aaKnown RBP20.94■□□□□ 0.94
SCAF1-202ENST00000595242 EHMT2Q96KQ7 1210 aa20.93■□□□□ 0.94
SCAF1-202ENST00000595242 SPAG9O60271 1321 aaKnown RBP20.93■□□□□ 0.94
SCAF1-202ENST00000595242 ZNF777Q9ULD5 760 aaPredicted RBP20.92■□□□□ 0.94
SCAF1-202ENST00000595242 PLXNC1O60486 1568 aa20.92■□□□□ 0.94
SCAF1-202ENST00000595242 SYCP2Q9BX26 1530 aa20.91■□□□□ 0.94
SCAF1-202ENST00000595242 ATP7AQ04656 1500 aa20.9■□□□□ 0.94
SCAF1-202ENST00000595242 A2ML1A8K2U0 1454 aa20.9■□□□□ 0.94
SCAF1-202ENST00000595242 SHANK2Q9UPX8 1470 aa20.9■□□□□ 0.94
SCAF1-202ENST00000595242 GGT6Q6P531 493 aa20.9■□□□□ 0.94
SCAF1-202ENST00000595242 NEURL4Q96JN8 1562 aa20.89■□□□□ 0.93
SCAF1-202ENST00000595242 A2MP01023 1474 aa20.88■□□□□ 0.93
SCAF1-202ENST00000595242 INO80Q9ULG1 1556 aaPredicted RBP20.88■□□□□ 0.93
SCAF1-202ENST00000595242 HNRNPMP52272 730 aaKnown RBP eCLIP20.87■□□□□ 0.93
SCAF1-202ENST00000595242 CCDC18Q5T9S5 1454 aa20.87■□□□□ 0.93
SCAF1-202ENST00000595242 ALKQ9UM73 1620 aa20.86■□□□□ 0.93
SCAF1-202ENST00000595242 ADGBQ8N7X0 1667 aa20.86■□□□□ 0.93
SCAF1-202ENST00000595242 VWDEQ8N2E2 1590 aa20.83■□□□□ 0.92
SCAF1-202ENST00000595242 GPATCH8Q9UKJ3 1502 aaKnown RBP20.81■□□□□ 0.92
SCAF1-202ENST00000595242 CASKIN1Q8WXD9 1431 aa20.8■□□□□ 0.92
SCAF1-202ENST00000595242 SENP3Q9H4L4 574 aaPredicted RBP20.8■□□□□ 0.92
SCAF1-202ENST00000595242 KIAA1107Q9UPP5 1409 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms