RNA–Protein interactions for RNA: ENST00000592388.1

VAT1-209, Transcript of vesicle amine transport 1, humanhuman

TSL 5

Gene VAT1, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-209ENST00000592388 EFCAB5A4FU69 1503 aa12.83□□□□□ -0.35
VAT1-209ENST00000592388 ARHGEF12Q9NZN5 1544 aa12.83□□□□□ -0.35
VAT1-209ENST00000592388 HSPA1LP34931 641 aa12.83□□□□□ -0.36
VAT1-209ENST00000592388 SCAF1Q9H7N4 1312 aaKnown RBP12.83□□□□□ -0.36
VAT1-209ENST00000592388 ZMYM4Q5VZL5 1548 aa12.81□□□□□ -0.36
VAT1-209ENST00000592388 SETD1BQ9UPS6 1966 aaKnown RBP12.81□□□□□ -0.36
VAT1-209ENST00000592388 ZNF335Q9H4Z2 1342 aaPredicted RBP12.81□□□□□ -0.36
VAT1-209ENST00000592388 MAGI2Q86UL8 1455 aa12.79□□□□□ -0.36
VAT1-209ENST00000592388 PIP4K2BP78356 416 aa12.79□□□□□ -0.36
VAT1-209ENST00000592388 HECW1Q76N89 1606 aa12.79□□□□□ -0.36
VAT1-209ENST00000592388 CTTNBP2Q8WZ74 1663 aa12.79□□□□□ -0.36
VAT1-209ENST00000592388 NCOA1Q15788 1441 aa12.77□□□□□ -0.37
VAT1-209ENST00000592388 ATP10AO60312 1499 aa12.77□□□□□ -0.37
VAT1-209ENST00000592388 C9orf84Q5VXU9 1444 aa12.76□□□□□ -0.37
VAT1-209ENST00000592388 NCKAP5LQ9HCH0 1330 aa12.75□□□□□ -0.37
VAT1-209ENST00000592388 CFAP74Q9C0B2 1584 aa12.73□□□□□ -0.37
VAT1-209ENST00000592388 SCAPERQ9BY12 1400 aa12.73□□□□□ -0.37
VAT1-209ENST00000592388 PLEKHD1A6NEE1 506 aa12.73□□□□□ -0.37
VAT1-209ENST00000592388 TRAPPC8Q9Y2L5 1435 aa12.71□□□□□ -0.37
VAT1-209ENST00000592388 ESF1Q9H501 851 aaKnown RBP12.71□□□□□ -0.37
VAT1-209ENST00000592388 CAMSAP1Q5T5Y3 1602 aa12.7□□□□□ -0.38
VAT1-209ENST00000592388 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.7□□□□□ -0.38
VAT1-209ENST00000592388 RAPGEF6Q8TEU7 1601 aa12.7□□□□□ -0.38
VAT1-209ENST00000592388 TOM1O60784 492 aa12.69□□□□□ -0.38
VAT1-209ENST00000592388 SENP3Q9H4L4 574 aaPredicted RBP12.69□□□□□ -0.38
VAT1-209ENST00000592388 MYT1LQ9UL68 1186 aa12.69□□□□□ -0.38
VAT1-209ENST00000592388 C3P01024 1663 aa12.69□□□□□ -0.38
VAT1-209ENST00000592388 NUP153P49790 1475 aaKnown RBP12.68□□□□□ -0.38
VAT1-209ENST00000592388 PKD2Q13563 968 aa12.64□□□□□ -0.39
VAT1-209ENST00000592388 RGS17Q9UGC6 210 aaPredicted RBP12.64□□□□□ -0.39
VAT1-209ENST00000592388 AFAP1Q8N556 730 aa12.63□□□□□ -0.39
VAT1-209ENST00000592388 PPP6R1Q9UPN7 881 aa12.63□□□□□ -0.39
VAT1-209ENST00000592388 PLCH2O75038 1416 aa12.62□□□□□ -0.39
VAT1-209ENST00000592388 RANGAP1P46060 587 aaPredicted RBP12.61□□□□□ -0.39
VAT1-209ENST00000592388 EFCAB2Q5VUJ9 269 aa12.61□□□□□ -0.39
VAT1-209ENST00000592388 PRXQ9BXM0 1461 aa12.59□□□□□ -0.39
VAT1-209ENST00000592388 SAMD9Q5K651 1589 aa12.57□□□□□ -0.4
VAT1-209ENST00000592388 DIP2CQ9Y2E4 1556 aa12.57□□□□□ -0.4
VAT1-209ENST00000592388 ZNF518AQ6AHZ1 1483 aa12.57□□□□□ -0.4
VAT1-209ENST00000592388 NPATQ14207 1427 aa12.56□□□□□ -0.4
VAT1-209ENST00000592388 CNTLNQ9NXG0 1405 aa12.56□□□□□ -0.4
VAT1-209ENST00000592388 PLA2R1Q13018 1463 aa12.56□□□□□ -0.4
VAT1-209ENST00000592388 TCOF1Q13428 1488 aaKnown RBP12.56□□□□□ -0.4
VAT1-209ENST00000592388 POTEAQ6S8J7 498 aa12.55□□□□□ -0.4
VAT1-209ENST00000592388 AGLP35573 1532 aa12.55□□□□□ -0.4
VAT1-209ENST00000592388 ZMYM3Q14202 1370 aa12.55□□□□□ -0.4
VAT1-209ENST00000592388 PTPRKQ15262 1439 aa12.54□□□□□ -0.4
VAT1-209ENST00000592388 KDM5CP41229 1560 aa12.53□□□□□ -0.4
VAT1-209ENST00000592388 REREQ9P2R6 1566 aa12.53□□□□□ -0.4
VAT1-209ENST00000592388 CPS1P31327 1500 aa12.52□□□□□ -0.4
VAT1-209ENST00000592388 ABCA6Q8N139 1617 aa12.52□□□□□ -0.4
VAT1-209ENST00000592388 SHANK2Q9UPX8 1470 aa12.52□□□□□ -0.41
VAT1-209ENST00000592388 ALKQ9UM73 1620 aa12.51□□□□□ -0.41
VAT1-209ENST00000592388 CDK13Q14004 1512 aaKnown RBP12.51□□□□□ -0.41
VAT1-209ENST00000592388 SUPT6HQ7KZ85 1726 aaKnown RBP12.51□□□□□ -0.41
VAT1-209ENST00000592388 CEP170BQ9Y4F5 1589 aaPredicted RBP12.5□□□□□ -0.41
VAT1-209ENST00000592388 MLH3Q9UHC1 1453 aa12.49□□□□□ -0.41
VAT1-209ENST00000592388 MYO3AQ8NEV4 1616 aa12.48□□□□□ -0.41
VAT1-209ENST00000592388 ARHGAP5Q13017 1502 aa12.48□□□□□ -0.41
VAT1-209ENST00000592388 CHIC1Q5VXU3 224 aa12.48□□□□□ -0.41
VAT1-209ENST00000592388 MYO5CQ9NQX4 1742 aa12.48□□□□□ -0.41
VAT1-209ENST00000592388 ZNF142P52746 1687 aaPredicted RBP12.48□□□□□ -0.41
VAT1-209ENST00000592388 ATP1B4Q9UN42 357 aaPredicted RBP12.46□□□□□ -0.41
VAT1-209ENST00000592388 MROH2AA6NES4 1674 aa12.45□□□□□ -0.42
VAT1-209ENST00000592388 SETD1AO15047 1707 aaKnown RBP12.45□□□□□ -0.42
VAT1-209ENST00000592388 KIF14Q15058 1648 aa12.42□□□□□ -0.42
VAT1-209ENST00000592388 CSRNP3Q8WYN3 585 aa12.42□□□□□ -0.42
VAT1-209ENST00000592388 UPF1Q92900 1129 aaKnown RBP eCLIP12.42□□□□□ -0.426e-13■■■■■ 33.2
VAT1-209ENST00000592388 NEURL4Q96JN8 1562 aa12.42□□□□□ -0.42
VAT1-209ENST00000592388 CLTCQ00610 1675 aaKnown RBP12.42□□□□□ -0.42
VAT1-209ENST00000592388 GGT6Q6P531 493 aa12.41□□□□□ -0.42
VAT1-209ENST00000592388 VWDEQ8N2E2 1590 aa12.41□□□□□ -0.42
VAT1-209ENST00000592388 DNMT1P26358 1616 aaKnown RBP12.4□□□□□ -0.42
VAT1-209ENST00000592388 A2ML1A8K2U0 1454 aa12.4□□□□□ -0.42
VAT1-209ENST00000592388 EEA1Q15075 1411 aa12.4□□□□□ -0.42
VAT1-209ENST00000592388 ANKLE2Q86XL3 938 aa12.4□□□□□ -0.42
VAT1-209ENST00000592388 SRCAPQ6ZRS2 3230 aa12.4□□□□□ -0.42
VAT1-209ENST00000592388 KIDINS220Q9ULH0 1771 aa12.4□□□□□ -0.42
VAT1-209ENST00000592388 CDK11AQ9UQ88 783 aaPredicted RBP12.39□□□□□ -0.43
VAT1-209ENST00000592388 POLR1AO95602 1720 aaPredicted RBP12.38□□□□□ -0.43
VAT1-209ENST00000592388 LRRC7Q96NW7 1537 aa12.37□□□□□ -0.43
VAT1-209ENST00000592388 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.37□□□□□ -0.432e-6■■■□□ 17.8
VAT1-209ENST00000592388 ABCC1P33527 1531 aa12.36□□□□□ -0.43
VAT1-209ENST00000592388 NPHP4O75161 1426 aaPredicted RBP12.36□□□□□ -0.43
VAT1-209ENST00000592388 CDC42BPBQ9Y5S2 1711 aa12.34□□□□□ -0.43
VAT1-209ENST00000592388 RNF17Q9BXT8 1623 aaKnown RBP12.34□□□□□ -0.43
VAT1-209ENST00000592388 FBXO31Q5XUX0 539 aaPredicted RBP12.34□□□□□ -0.43
VAT1-209ENST00000592388 ITSN2Q9NZM3 1697 aa12.34□□□□□ -0.43
VAT1-209ENST00000592388 TROQ12816 1431 aaPredicted RBP12.34□□□□□ -0.43
VAT1-209ENST00000592388 SPAG9O60271 1321 aaKnown RBP12.34□□□□□ -0.43
VAT1-209ENST00000592388 TRIM52Q96A61 297 aa12.33□□□□□ -0.44
VAT1-209ENST00000592388 LRRIQ1Q96JM4 1722 aa12.33□□□□□ -0.44
VAT1-209ENST00000592388 CLIP1P30622 1438 aa12.32□□□□□ -0.44
VAT1-209ENST00000592388 THEMISQ8N1K5 641 aaPredicted RBP12.32□□□□□ -0.44
VAT1-209ENST00000592388 ZNF777Q9ULD5 760 aaPredicted RBP12.32□□□□□ -0.44
VAT1-209ENST00000592388 STRCP1A6NGW2 1772 aa12.32□□□□□ -0.44
VAT1-209ENST00000592388 TNRQ92752 1358 aa12.31□□□□□ -0.44
VAT1-209ENST00000592388 EHMT2Q96KQ7 1210 aa12.31□□□□□ -0.44
VAT1-209ENST00000592388 SAMD9LQ8IVG5 1584 aa12.3□□□□□ -0.44
VAT1-209ENST00000592388 MED14O60244 1454 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms