RNA–Protein interactions for RNA: ENST00000591709.1

POLR2E-208, Transcript of RNA polymerase II subunit E, human

TSL 2

Gene POLR2E, Length 685 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
POLR2E-208	ENST00000591709	CDK13	Q14004	1512 aa	Known RBP	28.63	■■■□□ 2.17
POLR2E-208	ENST00000591709	MYO5C	Q9NQX4	1742 aa		28.63	■■■□□ 2.17
POLR2E-208	ENST00000591709	ARHGEF12	Q9NZN5	1544 aa		28.6	■■■□□ 2.17
POLR2E-208	ENST00000591709	STRC	Q7RTU9	1775 aa		28.6	■■■□□ 2.17
POLR2E-208	ENST00000591709	SCAPER	Q9BY12	1400 aa		28.55	■■■□□ 2.16
POLR2E-208	ENST00000591709	C9orf84	Q5VXU9	1444 aa		28.52	■■■□□ 2.16
POLR2E-208	ENST00000591709	ATP10A	O60312	1499 aa		28.51	■■■□□ 2.15
POLR2E-208	ENST00000591709	PLCH2	O75038	1416 aa		28.51	■■■□□ 2.15
POLR2E-208	ENST00000591709	SETD1B	Q9UPS6	1966 aa	Known RBP	28.5	■■■□□ 2.15
POLR2E-208	ENST00000591709	EEA1	Q15075	1411 aa		28.47	■■■□□ 2.15
POLR2E-208	ENST00000591709	DISP3	Q9P2K9	1392 aa		28.47	■■■□□ 2.15
POLR2E-208	ENST00000591709	KIF14	Q15058	1648 aa		28.47	■■■□□ 2.15
POLR2E-208	ENST00000591709	CEBPA	P49715	358 aa	Predicted RBP	28.44	■■■□□ 2.14
POLR2E-208	ENST00000591709	C3	P01024	1663 aa		28.43	■■■□□ 2.14
POLR2E-208	ENST00000591709	ILDR2	Q71H61	639 aa		28.42	■■■□□ 2.14
POLR2E-208	ENST00000591709	KDM5C	P41229	1560 aa		28.41	■■■□□ 2.14
POLR2E-208	ENST00000591709	SPATA31D1	Q6ZQQ2	1576 aa		28.41	■■■□□ 2.14
POLR2E-208	ENST00000591709	UHRF1BP1	Q6BDS2	1440 aa		28.4	■■■□□ 2.14
POLR2E-208	ENST00000591709	DIP2C	Q9Y2E4	1556 aa		28.4	■■■□□ 2.14
POLR2E-208	ENST00000591709	ZNF518A	Q6AHZ1	1483 aa		28.39	■■■□□ 2.13
POLR2E-208	ENST00000591709	LRRIQ1	Q96JM4	1722 aa		28.38	■■■□□ 2.13
POLR2E-208	ENST00000591709	ABCA6	Q8N139	1617 aa		28.37	■■■□□ 2.13
POLR2E-208	ENST00000591709	ARHGAP5	Q13017	1502 aa		28.37	■■■□□ 2.13
POLR2E-208	ENST00000591709	CDC42BPB	Q9Y5S2	1711 aa		28.35	■■■□□ 2.13
POLR2E-208	ENST00000591709	EFCAB2	Q5VUJ9	269 aa		28.34	■■■□□ 2.13
POLR2E-208	ENST00000591709	RERE	Q9P2R6	1566 aa		28.33	■■■□□ 2.12
POLR2E-208	ENST00000591709	DMRT2	Q9Y5R5	561 aa		28.32	■■■□□ 2.12
POLR2E-208	ENST00000591709	SOCS7	O14512	581 aa		28.31	■■■□□ 2.12
POLR2E-208	ENST00000591709	ATP1B4	Q9UN42	357 aa	Predicted RBP	28.3	■■■□□ 2.12
POLR2E-208	ENST00000591709	FMN1	Q68DA7	1419 aa		28.27	■■■□□ 2.12
POLR2E-208	ENST00000591709	ITSN2	Q9NZM3	1697 aa		28.27	■■■□□ 2.12
POLR2E-208	ENST00000591709	MYT1L	Q9UL68	1186 aa		28.26	■■■□□ 2.11
POLR2E-208	ENST00000591709	PTPRT	O14522	1441 aa		28.26	■■■□□ 2.11
POLR2E-208	ENST00000591709	AFAP1	Q8N556	730 aa		28.25	■■■□□ 2.11
POLR2E-208	ENST00000591709	PREX2	Q70Z35	1606 aa		28.25	■■■□□ 2.11
POLR2E-208	ENST00000591709	LTBP4	Q8N2S1	1624 aa		28.24	■■■□□ 2.11
POLR2E-208	ENST00000591709	TRO	Q12816	1431 aa	Predicted RBP	28.24	■■■□□ 2.11
POLR2E-208	ENST00000591709	ARHGAP35	Q9NRY4	1499 aa		28.21	■■■□□ 2.11
POLR2E-208	ENST00000591709	ABCC1	P33527	1531 aa		28.21	■■■□□ 2.11
POLR2E-208	ENST00000591709	KIDINS220	Q9ULH0	1771 aa		28.21	■■■□□ 2.11
POLR2E-208	ENST00000591709	CLIP1	P30622	1438 aa		28.2	■■■□□ 2.11
POLR2E-208	ENST00000591709	CDK11A	Q9UQ88	783 aa	Predicted RBP	28.2	■■■□□ 2.1
POLR2E-208	ENST00000591709	AGL	P35573	1532 aa		28.19	■■■□□ 2.1
POLR2E-208	ENST00000591709	MLH3	Q9UHC1	1453 aa		28.19	■■■□□ 2.1
POLR2E-208	ENST00000591709	EHMT2	Q96KQ7	1210 aa		28.17	■■■□□ 2.1
POLR2E-208	ENST00000591709	CDC42BPA	Q5VT25	1732 aa		28.16	■■■□□ 2.1
POLR2E-208	ENST00000591709	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.15	■■■□□ 2.1
POLR2E-208	ENST00000591709	MROH2A	A6NES4	1674 aa		28.15	■■■□□ 2.1
POLR2E-208	ENST00000591709	NCOA1	Q15788	1441 aa		28.15	■■■□□ 2.1
POLR2E-208	ENST00000591709	IQSEC2	Q5JU85	1478 aa		28.15	■■■□□ 2.1
POLR2E-208	ENST00000591709	TRAPPC8	Q9Y2L5	1435 aa		28.13	■■■□□ 2.09
POLR2E-208	ENST00000591709	ESF1	Q9H501	851 aa	Known RBP	28.12	■■■□□ 2.09
POLR2E-208	ENST00000591709	CAMSAP1	Q5T5Y3	1602 aa		28.11	■■■□□ 2.09
POLR2E-208	ENST00000591709	UBTF	P17480	764 aa	Known RBP	28.09	■■■□□ 2.09
POLR2E-208	ENST00000591709	CNTLN	Q9NXG0	1405 aa		28.08	■■■□□ 2.09
POLR2E-208	ENST00000591709	ZNF142	P52746	1687 aa	Predicted RBP	28.06	■■■□□ 2.08
POLR2E-208	ENST00000591709	CLTC	Q00610	1675 aa	Known RBP	28.05	■■■□□ 2.08
POLR2E-208	ENST00000591709	MYO3A	Q8NEV4	1616 aa		28.04	■■■□□ 2.08
POLR2E-208	ENST00000591709	SAMD9L	Q8IVG5	1584 aa		28.03	■■■□□ 2.08
POLR2E-208	ENST00000591709	NPAT	Q14207	1427 aa		28	■■■□□ 2.07
POLR2E-208	ENST00000591709	CCDC18	Q5T9S5	1454 aa		27.98	■■■□□ 2.07
POLR2E-208	ENST00000591709	SYCP2	Q9BX26	1530 aa		27.97	■■■□□ 2.07
POLR2E-208	ENST00000591709	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	27.94	■■■□□ 2.06
POLR2E-208	ENST00000591709	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	27.93	■■■□□ 2.06
POLR2E-208	ENST00000591709	NCKAP5L	Q9HCH0	1330 aa		27.92	■■■□□ 2.06
POLR2E-208	ENST00000591709	PLXNC1	O60486	1568 aa		27.91	■■■□□ 2.06
POLR2E-208	ENST00000591709	INO80	Q9ULG1	1556 aa	Predicted RBP	27.91	■■■□□ 2.06
POLR2E-208	ENST00000591709	ZMYM3	Q14202	1370 aa		27.91	■■■□□ 2.06
POLR2E-208	ENST00000591709	ATP7A	Q04656	1500 aa		27.91	■■■□□ 2.06
POLR2E-208	ENST00000591709	CASKIN1	Q8WXD9	1431 aa		27.9	■■■□□ 2.06
POLR2E-208	ENST00000591709	PLA2R1	Q13018	1463 aa		27.89	■■■□□ 2.05
POLR2E-208	ENST00000591709	UBAP1L	F5GYI3	381 aa		27.88	■■■□□ 2.05
POLR2E-208	ENST00000591709	TCOF1	Q13428	1488 aa	Known RBP	27.85	■■■□□ 2.05
POLR2E-208	ENST00000591709	POLR1A	O95602	1720 aa	Predicted RBP	27.85	■■■□□ 2.05
POLR2E-208	ENST00000591709	ZNF777	Q9ULD5	760 aa	Predicted RBP	27.85	■■■□□ 2.05
POLR2E-208	ENST00000591709	ADGB	Q8N7X0	1667 aa		27.84	■■■□□ 2.05
POLR2E-208	ENST00000591709	SPAG9	O60271	1321 aa	Known RBP	27.83	■■■□□ 2.05
POLR2E-208	ENST00000591709	PTPRK	Q15262	1439 aa		27.82	■■■□□ 2.04
POLR2E-208	ENST00000591709	FYCO1	Q9BQS8	1478 aa		27.81	■■■□□ 2.04
POLR2E-208	ENST00000591709	A2M	P01023	1474 aa		27.8	■■■□□ 2.04
POLR2E-208	ENST00000591709	GPATCH8	Q9UKJ3	1502 aa	Known RBP	27.8	■■■□□ 2.04
POLR2E-208	ENST00000591709	PKD2	Q13563	968 aa		27.78	■■■□□ 2.04
POLR2E-208	ENST00000591709	MED1	Q15648	1581 aa	Predicted RBP	27.77	■■■□□ 2.04
POLR2E-208	ENST00000591709	HNRNPM	P52272	730 aa	Known RBP eCLIP	27.77	■■■□□ 2.04
POLR2E-208	ENST00000591709	DNMT1	P26358	1616 aa	Known RBP	27.77	■■■□□ 2.04
POLR2E-208	ENST00000591709	PLEKHH2	Q8IVE3	1493 aa		27.73	■■■□□ 2.03
POLR2E-208	ENST00000591709	CHIC1	Q5VXU3	224 aa		27.73	■■■□□ 2.03
POLR2E-208	ENST00000591709	PPP6R1	Q9UPN7	881 aa		27.72	■■■□□ 2.03
POLR2E-208	ENST00000591709	GGT6	Q6P531	493 aa		27.71	■■■□□ 2.03
POLR2E-208	ENST00000591709	NEURL4	Q96JN8	1562 aa		27.71	■■■□□ 2.03
POLR2E-208	ENST00000591709	KIAA1107	Q9UPP5	1409 aa		27.71	■■■□□ 2.03
POLR2E-208	ENST00000591709	A2ML1	A8K2U0	1454 aa		27.7	■■■□□ 2.03
POLR2E-208	ENST00000591709	SCAF1	Q9H7N4	1312 aa	Known RBP	27.68	■■■□□ 2.02
POLR2E-208	ENST00000591709	CPS1	P31327	1500 aa		27.65	■■■□□ 2.02
POLR2E-208	ENST00000591709	CFDP1	Q9UEE9	299 aa	Predicted RBP	27.64	■■■□□ 2.02
POLR2E-208	ENST00000591709	CCNB3	Q8WWL7	1395 aa		27.63	■■■□□ 2.01
POLR2E-208	ENST00000591709	HSPA1L	P34931	641 aa		27.63	■■■□□ 2.01
POLR2E-208	ENST00000591709	TIAM1	Q13009	1591 aa		27.62	■■■□□ 2.01
POLR2E-208	ENST00000591709	PIP4K2B	P78356	416 aa		27.62	■■■□□ 2.01
POLR2E-208	ENST00000591709	SHANK2	Q9UPX8	1470 aa		27.58	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms