RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 RIMBP3CA6NJZ7 1639 aa15.36■□□□□ 0.05
VPS4B-206ENST00000591475 RIMBP3BA6NNM3 1639 aa15.36■□□□□ 0.05
VPS4B-206ENST00000591475 RIMBP3Q9UFD9 1639 aa15.36■□□□□ 0.05
VPS4B-206ENST00000591475 PPP1R15AO75807 674 aaPredicted RBP15.35■□□□□ 0.05
VPS4B-206ENST00000591475 NPM1P06748 294 aaKnown RBP eCLIP15.34■□□□□ 0.05
VPS4B-206ENST00000591475 CYB5RLQ6IPT4 315 aa15.34■□□□□ 0.05
VPS4B-206ENST00000591475 ZCCHC11Q5TAX3 1644 aaKnown RBP15.33■□□□□ 0.05
VPS4B-206ENST00000591475 MYOM3Q5VTT5 1437 aa15.32■□□□□ 0.04
VPS4B-206ENST00000591475 CCER2I3L3R5 266 aa15.31■□□□□ 0.04
VPS4B-206ENST00000591475 FGD6Q6ZV73 1430 aa15.3■□□□□ 0.04
VPS4B-206ENST00000591475 KIF14Q15058 1648 aa15.3■□□□□ 0.04
VPS4B-206ENST00000591475 ANP32CO43423 234 aa15.27■□□□□ 0.04
VPS4B-206ENST00000591475 FKBP8Q14318 412 aa15.27■□□□□ 0.04
VPS4B-206ENST00000591475 MIA2Q96PC5 1412 aa15.27■□□□□ 0.04
VPS4B-206ENST00000591475 PTPN23Q9H3S7 1636 aa15.27■□□□□ 0.03
VPS4B-206ENST00000591475 TONSLQ96HA7 1378 aa15.26■□□□□ 0.03
VPS4B-206ENST00000591475 WDR7Q9Y4E6 1490 aa15.26■□□□□ 0.03
VPS4B-206ENST00000591475 ABCC10Q5T3U5 1492 aa15.25■□□□□ 0.03
VPS4B-206ENST00000591475 HFM1A2PYH4 1435 aa15.24■□□□□ 0.03
VPS4B-206ENST00000591475 ASXL2Q76L83 1435 aa15.24■□□□□ 0.03
VPS4B-206ENST00000591475 NEFLP07196 543 aa15.24■□□□□ 0.03
VPS4B-206ENST00000591475 BCANQ96GW7 911 aa15.24■□□□□ 0.03
VPS4B-206ENST00000591475 GPATCH8Q9UKJ3 1502 aaKnown RBP15.23■□□□□ 0.03
VPS4B-206ENST00000591475 HIRIP3Q9BW71 556 aaPredicted RBP15.22■□□□□ 0.03
VPS4B-206ENST00000591475 CFDP1Q9UEE9 299 aaPredicted RBP15.22■□□□□ 0.03
VPS4B-206ENST00000591475 ITSN2Q9NZM3 1697 aa15.21■□□□□ 0.03
VPS4B-206ENST00000591475 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.21■□□□□ 0.03
VPS4B-206ENST00000591475 TCOF1Q13428 1488 aaKnown RBP15.2■□□□□ 0.02
VPS4B-206ENST00000591475 ANP32EQ9BTT0 268 aa15.2■□□□□ 0.02
VPS4B-206ENST00000591475 PTPRKQ15262 1439 aa15.19■□□□□ 0.02
VPS4B-206ENST00000591475 TTC37Q6PGP7 1564 aa15.17■□□□□ 0.02
VPS4B-206ENST00000591475 NAIPQ13075 1403 aa15.17■□□□□ 0.02
VPS4B-206ENST00000591475 TRIM52Q96A61 297 aa15.17■□□□□ 0.02
VPS4B-206ENST00000591475 CDC42BPAQ5VT25 1732 aa15.16■□□□□ 0.02
VPS4B-206ENST00000591475 ZNF777Q9ULD5 760 aaPredicted RBP15.15■□□□□ 0.02
VPS4B-206ENST00000591475 PLCH2O75038 1416 aa15.15■□□□□ 0.02
VPS4B-206ENST00000591475 ZNF644Q9H582 1327 aaPredicted RBP15.15■□□□□ 0.02
VPS4B-206ENST00000591475 GCC2Q8IWJ2 1684 aa15.14■□□□□ 0.02
VPS4B-206ENST00000591475 PREX2Q70Z35 1606 aa15.14■□□□□ 0.01
VPS4B-206ENST00000591475 ABCA9Q8IUA7 1624 aa15.13■□□□□ 0.01
VPS4B-206ENST00000591475 CAMSAP2Q08AD1 1489 aa15.13■□□□□ 0.01
VPS4B-206ENST00000591475 MYO5CQ9NQX4 1742 aa15.12■□□□□ 0.01
VPS4B-206ENST00000591475 ARHGAP5Q13017 1502 aa15.12■□□□□ 0.01
VPS4B-206ENST00000591475 ARAP3Q8WWN8 1544 aa15.11■□□□□ 0.01
VPS4B-206ENST00000591475 EFCAB2Q5VUJ9 269 aa15.11■□□□□ 0.01
VPS4B-206ENST00000591475 CDC42BPBQ9Y5S2 1711 aa15.11■□□□□ 0.01
VPS4B-206ENST00000591475 PLEKHH2Q8IVE3 1493 aa15.08■□□□□ 0
VPS4B-206ENST00000591475 DAPK1P53355 1430 aa15.08■□□□□ 0
VPS4B-206ENST00000591475 RSPH4AQ5TD94 716 aa15.07■□□□□ 0
VPS4B-206ENST00000591475 CD109Q6YHK3 1445 aa15.07■□□□□ 0
VPS4B-206ENST00000591475 DNMT1P26358 1616 aaKnown RBP15.07■□□□□ 0
VPS4B-206ENST00000591475 RBM19Q9Y4C8 960 aaKnown RBP15.07■□□□□ 0
VPS4B-206ENST00000591475 ABCC5O15440 1437 aa15.06■□□□□ 0
VPS4B-206ENST00000591475 SAMD9LQ8IVG5 1584 aa15.06■□□□□ 0
VPS4B-206ENST00000591475 AKNAQ7Z591 1439 aa15.06■□□□□ 0
VPS4B-206ENST00000591475 KIAA1107Q9UPP5 1409 aa15.06■□□□□ 0
VPS4B-206ENST00000591475 FANCAO15360 1455 aa15.05■□□□□ 0
VPS4B-206ENST00000591475 HNRNPMP52272 730 aaKnown RBP eCLIP15.05■□□□□ -0
VPS4B-206ENST00000591475 GLI2P10070 1586 aa15.05■□□□□ -0
VPS4B-206ENST00000591475 MBD5Q9P267 1494 aa15.04■□□□□ -0
VPS4B-206ENST00000591475 CHIC2Q9UKJ5 165 aa15.04■□□□□ -0
VPS4B-206ENST00000591475 ARHGEF5Q12774 1597 aa15.03■□□□□ -0
VPS4B-206ENST00000591475 TSPY4P0CV99 314 aa15.03■□□□□ -0
VPS4B-206ENST00000591475 TSPY10P0CW01 314 aa15.03■□□□□ -0
VPS4B-206ENST00000591475 HNRNPUQ00839 825 aaKnown RBP eCLIP15.03■□□□□ -0
VPS4B-206ENST00000591475 FAM69CQ0P6D2 419 aa15.03■□□□□ -0
VPS4B-206ENST00000591475 ROCK1Q13464 1354 aa15.02■□□□□ -0
VPS4B-206ENST00000591475 HSPA5P11021 654 aaKnown RBP15.02□□□□□ -0.01
VPS4B-206ENST00000591475 DIP2BQ9P265 1576 aa15.02□□□□□ -0.01
VPS4B-206ENST00000591475 SYCP2Q9BX26 1530 aa15.01□□□□□ -0.01
VPS4B-206ENST00000591475 DENND4BO75064 1496 aaPredicted RBP15.01□□□□□ -0.01
VPS4B-206ENST00000591475 CCDC141Q6ZP82 1450 aa15.01□□□□□ -0.01
VPS4B-206ENST00000591475 RRP7BPQ9NSQ0 103 aa15.01□□□□□ -0.01
VPS4B-206ENST00000591475 WASHC2AQ641Q2 1341 aa15.01□□□□□ -0.01
VPS4B-206ENST00000591475 SHANK2Q9UPX8 1470 aa15.01□□□□□ -0.01
VPS4B-206ENST00000591475 KDM6BO15054 1643 aa15□□□□□ -0.01
VPS4B-206ENST00000591475 ABCC1P33527 1531 aa15□□□□□ -0.01
VPS4B-206ENST00000591475 MAP3K4Q9Y6R4 1608 aa14.99□□□□□ -0.01
VPS4B-206ENST00000591475 EIF4G2P78344 907 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS4B-206ENST00000591475 CNTLNQ9NXG0 1405 aa14.99□□□□□ -0.01
VPS4B-206ENST00000591475 ARHGEF12Q9NZN5 1544 aa14.98□□□□□ -0.01
VPS4B-206ENST00000591475 CFAP74Q9C0B2 1584 aa14.98□□□□□ -0.01
VPS4B-206ENST00000591475 C9orf84Q5VXU9 1444 aa14.98□□□□□ -0.01
VPS4B-206ENST00000591475 ADGRL1O94910 1474 aa14.98□□□□□ -0.01
VPS4B-206ENST00000591475 CROCC2H7BZ55 1655 aa14.98□□□□□ -0.01
VPS4B-206ENST00000591475 ANKRD30AQ9BXX3 1397 aa14.98□□□□□ -0.01
VPS4B-206ENST00000591475 NCOA1Q15788 1441 aa14.97□□□□□ -0.01
VPS4B-206ENST00000591475 ADGRL2O95490 1459 aa14.97□□□□□ -0.01
VPS4B-206ENST00000591475 NEO1Q92859 1461 aa14.97□□□□□ -0.01
VPS4B-206ENST00000591475 POLR1AO95602 1720 aaPredicted RBP14.97□□□□□ -0.01
VPS4B-206ENST00000591475 SCAPERQ9BY12 1400 aa14.96□□□□□ -0.01
VPS4B-206ENST00000591475 ERICH6BQ5W0A0 696 aa14.95□□□□□ -0.02
VPS4B-206ENST00000591475 MPHOSPH9Q99550 1183 aa14.95□□□□□ -0.02
VPS4B-206ENST00000591475 TRAPPC8Q9Y2L5 1435 aa14.95□□□□□ -0.02
VPS4B-206ENST00000591475 ADGBQ8N7X0 1667 aa14.93□□□□□ -0.02
VPS4B-206ENST00000591475 AFAP1Q8N556 730 aa14.93□□□□□ -0.02
VPS4B-206ENST00000591475 MAST1Q9Y2H9 1570 aa14.92□□□□□ -0.02
VPS4B-206ENST00000591475 TEX14Q8IWB6 1497 aa14.92□□□□□ -0.02
VPS4B-206ENST00000591475 CCDC7Q96M83 1385 aa14.92□□□□□ -0.02
VPS4B-206ENST00000591475 ZNF518AQ6AHZ1 1483 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms