RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 CDK13Q14004 1512 aaKnown RBP29.17■■■□□ 2.26
RETREG3-210ENST00000590541 SCAPERQ9BY12 1400 aa29.17■■■□□ 2.26
RETREG3-210ENST00000590541 PLCH2O75038 1416 aa29.16■■■□□ 2.26
RETREG3-210ENST00000590541 ARHGEF12Q9NZN5 1544 aa29.11■■■□□ 2.25
RETREG3-210ENST00000590541 ATP10AO60312 1499 aa29.1■■■□□ 2.25
RETREG3-210ENST00000590541 C9orf84Q5VXU9 1444 aa29.07■■■□□ 2.24
RETREG3-210ENST00000590541 PREX1Q8TCU6 1659 aa29.04■■■□□ 2.24
RETREG3-210ENST00000590541 CEBPAP49715 358 aaPredicted RBP29.02■■■□□ 2.24
RETREG3-210ENST00000590541 EFCAB2Q5VUJ9 269 aa29.02■■■□□ 2.24
RETREG3-210ENST00000590541 MYO5CQ9NQX4 1742 aa29■■■□□ 2.23
RETREG3-210ENST00000590541 ATP1B4Q9UN42 357 aaPredicted RBP28.95■■■□□ 2.22
RETREG3-210ENST00000590541 ZNF518AQ6AHZ1 1483 aa28.95■■■□□ 2.22
RETREG3-210ENST00000590541 STRCQ7RTU9 1775 aa28.95■■■□□ 2.22
RETREG3-210ENST00000590541 KIF14Q15058 1648 aa28.94■■■□□ 2.22
RETREG3-210ENST00000590541 FMN1Q68DA7 1419 aa28.94■■■□□ 2.22
RETREG3-210ENST00000590541 KDM5CP41229 1560 aa28.93■■■□□ 2.22
RETREG3-210ENST00000590541 AFAP1Q8N556 730 aa28.92■■■□□ 2.22
RETREG3-210ENST00000590541 CDK11AQ9UQ88 783 aaPredicted RBP28.9■■■□□ 2.22
RETREG3-210ENST00000590541 DMRT2Q9Y5R5 561 aa28.9■■■□□ 2.22
RETREG3-210ENST00000590541 UHRF1BP1Q6BDS2 1440 aa28.89■■■□□ 2.22
RETREG3-210ENST00000590541 ARHGAP35Q9NRY4 1499 aa28.89■■■□□ 2.22
RETREG3-210ENST00000590541 ARHGAP5Q13017 1502 aa28.88■■■□□ 2.21
RETREG3-210ENST00000590541 DIP2CQ9Y2E4 1556 aa28.88■■■□□ 2.21
RETREG3-210ENST00000590541 TROQ12816 1431 aaPredicted RBP28.87■■■□□ 2.21
RETREG3-210ENST00000590541 REREQ9P2R6 1566 aa28.84■■■□□ 2.21
RETREG3-210ENST00000590541 SETD1BQ9UPS6 1966 aaKnown RBP28.83■■■□□ 2.21
RETREG3-210ENST00000590541 ILDR2Q71H61 639 aa28.83■■■□□ 2.21
RETREG3-210ENST00000590541 EHMT2Q96KQ7 1210 aa28.83■■■□□ 2.21
RETREG3-210ENST00000590541 UBTFP17480 764 aaKnown RBP28.82■■■□□ 2.2
RETREG3-210ENST00000590541 DISP3Q9P2K9 1392 aa28.82■■■□□ 2.2
RETREG3-210ENST00000590541 ABCA6Q8N139 1617 aa28.81■■■□□ 2.2
RETREG3-210ENST00000590541 MYT1LQ9UL68 1186 aa28.81■■■□□ 2.2
RETREG3-210ENST00000590541 MLH3Q9UHC1 1453 aa28.8■■■□□ 2.2
RETREG3-210ENST00000590541 C3P01024 1663 aa28.8■■■□□ 2.2
RETREG3-210ENST00000590541 CLIP1P30622 1438 aa28.79■■■□□ 2.2
RETREG3-210ENST00000590541 LRRIQ1Q96JM4 1722 aa28.79■■■□□ 2.2
RETREG3-210ENST00000590541 PTPRTO14522 1441 aa28.78■■■□□ 2.2
RETREG3-210ENST00000590541 CDC42BPBQ9Y5S2 1711 aa28.78■■■□□ 2.2
RETREG3-210ENST00000590541 AGLP35573 1532 aa28.76■■■□□ 2.19
RETREG3-210ENST00000590541 TRAPPC8Q9Y2L5 1435 aa28.75■■■□□ 2.19
RETREG3-210ENST00000590541 ABCC1P33527 1531 aa28.72■■■□□ 2.19
RETREG3-210ENST00000590541 SOCS7O14512 581 aa28.71■■■□□ 2.19
RETREG3-210ENST00000590541 PREX2Q70Z35 1606 aa28.7■■■□□ 2.19
RETREG3-210ENST00000590541 LTBP4Q8N2S1 1624 aa28.7■■■□□ 2.19
RETREG3-210ENST00000590541 ITSN2Q9NZM3 1697 aa28.68■■■□□ 2.18
RETREG3-210ENST00000590541 ESF1Q9H501 851 aaKnown RBP28.68■■■□□ 2.18
RETREG3-210ENST00000590541 KIDINS220Q9ULH0 1771 aa28.66■■■□□ 2.18
RETREG3-210ENST00000590541 NCOA1Q15788 1441 aa28.65■■■□□ 2.18
RETREG3-210ENST00000590541 CNTLNQ9NXG0 1405 aa28.63■■■□□ 2.17
RETREG3-210ENST00000590541 SPATA31D1Q6ZQQ2 1576 aa28.62■■■□□ 2.17
RETREG3-210ENST00000590541 IQSEC2Q5JU85 1478 aa28.6■■■□□ 2.17
RETREG3-210ENST00000590541 CCDC18Q5T9S5 1454 aa28.59■■■□□ 2.17
RETREG3-210ENST00000590541 CASKIN1Q8WXD9 1431 aa28.58■■■□□ 2.17
RETREG3-210ENST00000590541 CDC42BPAQ5VT25 1732 aa28.57■■■□□ 2.16
RETREG3-210ENST00000590541 NPATQ14207 1427 aa28.56■■■□□ 2.16
RETREG3-210ENST00000590541 CAMSAP1Q5T5Y3 1602 aa28.55■■■□□ 2.16
RETREG3-210ENST00000590541 SAMD9LQ8IVG5 1584 aa28.55■■■□□ 2.16
RETREG3-210ENST00000590541 MROH2AA6NES4 1674 aa28.54■■■□□ 2.16
RETREG3-210ENST00000590541 ZMYM3Q14202 1370 aa28.52■■■□□ 2.16
RETREG3-210ENST00000590541 ZNF777Q9ULD5 760 aaPredicted RBP28.48■■■□□ 2.15
RETREG3-210ENST00000590541 SYCP2Q9BX26 1530 aa28.48■■■□□ 2.15
RETREG3-210ENST00000590541 NCKAP5LQ9HCH0 1330 aa28.47■■■□□ 2.15
RETREG3-210ENST00000590541 SUPT6HQ7KZ85 1726 aaKnown RBP28.46■■■□□ 2.15
RETREG3-210ENST00000590541 SPAG9O60271 1321 aaKnown RBP28.45■■■□□ 2.15
RETREG3-210ENST00000590541 GPATCH8Q9UKJ3 1502 aaKnown RBP28.45■■■□□ 2.15
RETREG3-210ENST00000590541 ZNF335Q9H4Z2 1342 aaPredicted RBP28.44■■■□□ 2.14
RETREG3-210ENST00000590541 HNRNPMP52272 730 aaKnown RBP eCLIP28.44■■■□□ 2.14
RETREG3-210ENST00000590541 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
RETREG3-210ENST00000590541 FYCO1Q9BQS8 1478 aa28.42■■■□□ 2.14
RETREG3-210ENST00000590541 CLTCQ00610 1675 aaKnown RBP28.42■■■□□ 2.14
RETREG3-210ENST00000590541 PLXNC1O60486 1568 aa28.41■■■□□ 2.14
RETREG3-210ENST00000590541 ATP7AQ04656 1500 aa28.41■■■□□ 2.14
RETREG3-210ENST00000590541 ZNF142P52746 1687 aaPredicted RBP28.41■■■□□ 2.14
RETREG3-210ENST00000590541 PLA2R1Q13018 1463 aa28.4■■■□□ 2.14
RETREG3-210ENST00000590541 MYO3AQ8NEV4 1616 aa28.4■■■□□ 2.14
RETREG3-210ENST00000590541 PTPRKQ15262 1439 aa28.39■■■□□ 2.14
RETREG3-210ENST00000590541 INO80Q9ULG1 1556 aaPredicted RBP28.39■■■□□ 2.14
RETREG3-210ENST00000590541 KIAA1107Q9UPP5 1409 aa28.38■■■□□ 2.13
RETREG3-210ENST00000590541 A2MP01023 1474 aa28.38■■■□□ 2.13
RETREG3-210ENST00000590541 UBAP1LF5GYI3 381 aa28.37■■■□□ 2.13
RETREG3-210ENST00000590541 PKD2Q13563 968 aa28.37■■■□□ 2.13
RETREG3-210ENST00000590541 TCOF1Q13428 1488 aaKnown RBP28.37■■■□□ 2.13
RETREG3-210ENST00000590541 CEP170BQ9Y4F5 1589 aaPredicted RBP28.37■■■□□ 2.13
RETREG3-210ENST00000590541 GGT6Q6P531 493 aa28.33■■■□□ 2.13
RETREG3-210ENST00000590541 PLEKHH2Q8IVE3 1493 aa28.33■■■□□ 2.13
RETREG3-210ENST00000590541 CFDP1Q9UEE9 299 aaPredicted RBP28.32■■■□□ 2.12
RETREG3-210ENST00000590541 CCNB3Q8WWL7 1395 aa28.27■■■□□ 2.12
RETREG3-210ENST00000590541 PPP6R1Q9UPN7 881 aa28.26■■■□□ 2.11
RETREG3-210ENST00000590541 ADGBQ8N7X0 1667 aa28.24■■■□□ 2.11
RETREG3-210ENST00000590541 A2ML1A8K2U0 1454 aa28.23■■■□□ 2.11
RETREG3-210ENST00000590541 DNMT1P26358 1616 aaKnown RBP28.22■■■□□ 2.11
RETREG3-210ENST00000590541 ZNF644Q9H582 1327 aaPredicted RBP28.2■■■□□ 2.11
RETREG3-210ENST00000590541 MBD5Q9P267 1494 aa28.19■■■□□ 2.1
RETREG3-210ENST00000590541 MTUS2Q5JR59 1369 aa28.17■■■□□ 2.1
RETREG3-210ENST00000590541 TIAM1Q13009 1591 aa28.16■■■□□ 2.1
RETREG3-210ENST00000590541 RTEL1-TNFRSF6BF6WH68 1400 aa28.15■■■□□ 2.1
RETREG3-210ENST00000590541 DHX29Q7Z478 1369 aaKnown RBP28.14■■■□□ 2.1
RETREG3-210ENST00000590541 NEURL4Q96JN8 1562 aa28.14■■■□□ 2.1
RETREG3-210ENST00000590541 HSPA1LP34931 641 aa28.13■■■□□ 2.09
RETREG3-210ENST00000590541 FBXO31Q5XUX0 539 aaPredicted RBP28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms